Factsheet for Solyc11g028100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065617	Potato	cytosol	91.06	91.06
Solyc06g011280.2.1	Tomato	extracellular	87.92	88.14
VIT_18s0041g01900.t01	Wine grape	cytosol	79.95	78.07
Os02t0220500-01	Rice	plasma membrane	78.02	78.02
Os02t0220600-02	Rice	extracellular, plasma membrane	77.29	76.56
EES04758	Sorghum	plastid	76.33	75.6
GSMUA_Achr9P11470_001	Banana	cytosol	70.05	75.52
Os06t0571400-01	Rice	plasma membrane	75.12	74.76
KRH01866	Soybean	nucleus	75.6	74.52
EER89969	Sorghum	cytosol	74.64	74.1
GSMUA_Achr9P25030_001	Banana	cytosol	65.46	74.04
Bra020005.1-P	Field mustard	cytosol	73.67	73.85
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	74.88	73.81
Zm00001d046352_P001	Maize	plasma membrane	74.15	73.62
Zm00001d016358_P006	Maize	cytosol	75.36	73.58
VIT_12s0035g01130.t01	Wine grape	cytosol	76.81	73.44
AT1G09640.1	Thale cress	cytosol	73.19	73.19
Zm00001d036959_P003	Maize	cytosol	72.95	72.42
KRH06050	Soybean	endoplasmic reticulum	73.19	72.31
Bra031676.1-P	Field mustard	cytosol	71.74	71.91
KRH26289	Soybean	nucleus	71.98	71.29
Zm00001d053576_P001	Maize	endoplasmic reticulum	75.12	71.17
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	69.57	70.24
AT1G57720.1	Thale cress	cytosol	69.81	69.98
TraesCS6A01G186000.1	Wheat	cytosol	71.26	69.74
TraesCS6B01G215000.1	Wheat	cytosol	71.01	69.5
TraesCS7D01G360200.2	Wheat	nucleus, plastid	69.08	69.25
HORVU7Hr1G087050.1	Barley	cytosol	69.08	69.25
TraesCS7A01G362900.1	Wheat	golgi	68.36	68.52
Solyc11g028090.1.1	Tomato	extracellular, plastid	28.26	57.92
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	14.01	52.73
Bra030790.1-P	Field mustard	cytosol	69.32	50.71
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	42.03	46.4
CDY04368	Canola	cytosol	25.36	39.92

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0006749	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987
InterPro:IPR036433	UniProt:K4D7F1	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798	PFscan:PS50040
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616
SUPFAM:SSF52833	SUPFAM:SSF89942	EnsemblPlantsGene:Solyc11g028100.1	EnsemblPlants:Solyc11g028100.1.1	InterPro:Thioredoxin-like_sf	UniParc:UPI000276993C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:20162515..20164605

Molecular Weight (calculated)

47338.0 Da

IEP (calculated)

6.116

GRAVY (calculated)

-0.373

Length

414 amino acids

Sequence
(BLAST)

001: MLQILHSTNN NKNASKALIA AEYTGVKVEV PKDFQMGVSN NTPEFLKMNP IGKVPVLETP DGPVFESNAI ARYVTKLKPN NPLFGSSLIE YSQIEQWNDF
101: SATEVDANIG RWLYPRLGFR VYIPAAEEAA VAALKRALGA LNTHLASNTY LVGHSITLAD IIMVCNLSIG FRMIMTKSFT KEFPHVERYF WTVVNQPNFC
201: KILREVKQAE SIPAVQSKKP AQPEKPKAKE ELKKEVKKEE PSPVEEEAAP KPKAKNPLDL LPPSKMILDD WKRLYSNTKT NFREVAVKGF WDMYDPEGYS
301: LWFCDYKYND ENTVSFVTLN KVGGFLQRMD LVRKYAFGKM LIVGSEAPFK VQGLWLFRGK EIPMFVMEEV YDMELYEWKE VDINDEAQKE RVSQMIEDHE
401: PFEGEALLDA KCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.