Factsheet for Solyc11g028090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g028100.1.1	Tomato	cytosol, unclear	57.92	28.26
Bra020005.1-P	Field mustard	cytosol	49.51	24.21
AT1G09640.1	Thale cress	cytosol	49.51	24.15
Solyc06g011280.2.1	Tomato	extracellular	48.51	23.73
Bra031676.1-P	Field mustard	cytosol	46.53	22.76
AT1G57720.1	Thale cress	cytosol	44.06	21.55
Bra030790.1-P	Field mustard	cytosol	47.52	16.96
HORVU6Hr1G039770.1	Barley	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	InterPro:EF1B_G_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0006749
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:IPR001662	InterPro:IPR010987
UniProt:K4D7F0	PFAM:PF00043	PFscan:PS50040	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2
SUPFAM:SSF47616	EnsemblPlantsGene:Solyc11g028090.1	EnsemblPlants:Solyc11g028090.1.1	UniParc:UPI000276993B	:	:

Description

No Description!

Coordinates

chr11:-:20143675..20144577

Molecular Weight (calculated)

22795.5 Da

IEP (calculated)

10.000

GRAVY (calculated)

-0.320

Length

202 amino acids

Sequence
(BLAST)

001: MDLFLKAMLS HSTVRPCLIF FHLSSHHIAK YSFDTDFTNS RSYQINAQQS SFGSSLFEYS EEAAVSALKR ALGTLNTHLA STKYLVEHLI TLADNIVVCN
101: LSIGFRMIMT KSFTKEIPRV ERYFWTVVNQ QNFSKILGKV KQAKSILAVQ SKKPTQLEKT KANEEPTKEV NKEEPSLVEK ETTPKPKAKN PLDLLPPSKI
201: SG

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.