Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22629 | Canola | cytosol | 91.06 | 90.84 |
| Bra031676.1-P | Field mustard | cytosol | 90.34 | 90.56 |
| CDY06365 | Canola | cytosol | 89.86 | 90.07 |
| CDY50887 | Canola | cytosol | 88.16 | 88.38 |
| Bra020005.1-P | Field mustard | cytosol | 87.44 | 87.65 |
| AT1G57720.1 | Thale cress | cytosol | 87.44 | 87.65 |
| CDX93494 | Canola | cytosol | 87.44 | 87.65 |
| CDY31074 | Canola | cytosol | 87.2 | 87.62 |
| GSMUA_Achr8P15790_001 | Banana | cytosol | 8.94 | 84.09 |
| Os02t0220500-01 | Rice | plasma membrane | 76.57 | 76.57 |
| Os02t0220600-02 | Rice | extracellular, plasma membrane | 77.05 | 76.32 |
| EES04758 | Sorghum | plastid | 76.81 | 76.08 |
| GSMUA_Achr9P11470_001 | Banana | cytosol | 70.05 | 75.52 |
| KRH01866 | Soybean | nucleus | 76.57 | 75.48 |
| GSMUA_Achr9P25030_001 | Banana | cytosol | 66.43 | 75.14 |
| KRH51299 | Soybean | cytosol, endoplasmic reticulum, nucleus | 75.36 | 74.29 |
| PGSC0003DMT400040683 | Potato | cytosol | 73.67 | 73.85 |
| VIT_18s0041g01900.t01 | Wine grape | cytosol | 75.6 | 73.82 |
| KRH06050 | Soybean | endoplasmic reticulum | 74.64 | 73.75 |
| EER89969 | Sorghum | cytosol | 74.15 | 73.62 |
| Zm00001d016358_P006 | Maize | cytosol | 75.36 | 73.58 |
| Solyc06g011280.2.1 | Tomato | extracellular | 73.19 | 73.37 |
| Os06t0571400-01 | Rice | plasma membrane | 73.67 | 73.32 |
| KRH26289 | Soybean | nucleus | 73.91 | 73.21 |
| Solyc11g028100.1.1 | Tomato | cytosol, unclear | 73.19 | 73.19 |
| PGSC0003DMT400065617 | Potato | cytosol | 72.71 | 72.71 |
| Zm00001d046352_P001 | Maize | plasma membrane | 72.95 | 72.42 |
| Zm00001d036959_P003 | Maize | cytosol | 72.95 | 72.42 |
| Zm00001d053576_P001 | Maize | endoplasmic reticulum | 75.36 | 71.4 |
| VIT_12s0035g01130.t01 | Wine grape | cytosol | 74.64 | 71.36 |
| TraesCS7A01G362900.1 | Wheat | golgi | 70.05 | 70.22 |
| TraesCS7D01G360200.2 | Wheat | nucleus, plastid | 70.05 | 70.22 |
| TraesCS7B01G266300.1 | Wheat | cytosol, golgi, plastid, unclear | 69.32 | 70.0 |
| GSMUA_Achr9P19980_001 | Banana | cytosol | 6.76 | 70.0 |
| HORVU7Hr1G087050.1 | Barley | cytosol | 69.57 | 69.73 |
| TraesCS6B01G215000.1 | Wheat | cytosol | 70.53 | 69.03 |
| TraesCS6A01G186000.1 | Wheat | cytosol | 70.05 | 68.56 |
| CDY20681 | Canola | cytosol | 87.68 | 65.05 |
| Bra030790.1-P | Field mustard | cytosol | 83.57 | 61.13 |
| GSMUA_Achr9P19970_001 | Banana | cytosol, mitochondrion | 15.22 | 57.27 |
| HORVU6Hr1G039770.1 | Barley | cytosol | 13.04 | 52.94 |
| Solyc11g028090.1.1 | Tomato | extracellular, plastid | 24.15 | 49.51 |
| GSMUA_Achr2P13820_001 | Banana | cytosol, endoplasmic reticulum, peroxisome, plastid | 43.24 | 47.73 |
| GSMUA_Achr8P15800_001 | Banana | extracellular | 7.49 | 45.59 |
| VIT_12s0035g01120.t01 | Wine grape | plastid | 48.31 | 44.05 |
Protein Annotations
| Gene3D:1.20.1050.10 | MapMan:17.5.1.2.2 | Gene3D:3.30.70.1010 | Gene3D:3.40.30.10 | EntrezGene:837491 | UniProt:A0A178W9F9 |
| ProteinID:AAB60721.1 | ProteinID:AEE28472.1 | EMBL:AK317542 | ArrayExpress:AT1G09640 | EnsemblPlantsGene:AT1G09640 | RefSeq:AT1G09640 |
| TAIR:AT1G09640 | RefSeq:AT1G09640-TAIR-G | EnsemblPlants:AT1G09640.1 | TAIR:AT1G09640.1 | EMBL:AY080820 | EMBL:AY089154 |
| Unigene:At.43279 | UniProt:B9DHI9 | InterPro:EF1B_G_C | InterPro:EF1B_G_C_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003746 | GO:GO:0003824 | GO:GO:0004364 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0006749 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:GST_C | InterPro:Glutathione-S-Trfase_C-like | InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N |
| InterPro:IPR001662 | InterPro:IPR004045 | InterPro:IPR010987 | InterPro:IPR036433 | RefSeq:NP_563848.1 | UniProt:O04487 |
| ProteinID:OAP14013.1 | PFAM:PF00043 | PFAM:PF00647 | PFAM:PF02798 | PO:PO:0000005 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001170 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50040 | PFscan:PS50404 | PFscan:PS50405 | PANTHER:PTHR44372 | PANTHER:PTHR44372:SF2 |
| SMART:SM01183 | SUPFAM:SSF47616 | SUPFAM:SSF52833 | SUPFAM:SSF89942 | InterPro:Thioredoxin-like_sf | UniParc:UPI0000129C51 |
| SEG:seg | : | : | : | : | : |
Description
Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
Coordinates
chr1:+:3119739..3122542
Molecular Weight (calculated)
46663.0 Da
IEP (calculated)
5.132
GRAVY (calculated)
-0.292
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.