CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020005.1-P	Field mustard	cytosol	99.27	99.27
CDY50887	Canola	cytosol	98.79	98.79
CDY22629	Canola	cytosol	88.14	87.71
CDY31074	Canola	cytosol	87.41	87.62
AT1G09640.1	Thale cress	cytosol	87.65	87.44
CDY06365	Canola	cytosol	86.92	86.92
CDY20681	Canola	cytosol	87.41	64.7
CDY04368	Canola	cytosol	29.78	46.77

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	GO:A0A078DYI9	EnsemblPlants:CDX93494
ProteinID:CDX93494	ProteinID:CDX93494.1	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00156163001	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662
InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798
PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183
SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EE200C	SEG:seg

Description

BnaA06g05540D

Coordinates

chrLK031876:-:421279..423974

Molecular Weight (calculated)

46400.8 Da

IEP (calculated)

5.612

GRAVY (calculated)

-0.272

Length

413 amino acids

Sequence
(BLAST)

001: MALVLHTYKG NKGAEKALIA AEYTGVKINV PDFEMGVSNK TPEFLKMNPI GKVPVLETPE GPIFESNAIA RYVSRLNGEN SLNGSSLIEY AQIEQWIDFS
101: SLEIFGSIFM WFGARIGYKP YSVPGEEAAI SALKRALDAL NTHLASKTFL VGHSITLADI ITVCNLSLGY TTVMTKSFTS AFPHVERYFW TVINQPNFKK
201: VVGEVKQTEA VPPVASKKPA QPAKAKEEPK KKAAPAAEAP KPVEEEEAPK PKAKNPLDLL PPSPMVLDEW KRLYSNTKSN FREVAIKGFW DMYDPEGYSL
301: WFCDYKYNDE NMVSFVTLNK VGGFLQRMDL ARKYAFGKML ICGSEGPFKV KGLWLFRGPE IPKFVMDEVY DMELYEWTKV DISDEAQKER VSQMIEDAEP
401: FEGEALLDAK CFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.