CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31074	Canola	cytosol	72.58	98.3
CDY06365	Canola	cytosol	66.31	89.59
CDY22629	Canola	cytosol	66.49	89.4
AT1G09640.1	Thale cress	cytosol	65.05	87.68
CDX93494	Canola	cytosol	64.7	87.41
CDY50887	Canola	cytosol	64.16	86.68
CDY04368	Canola	cytosol	22.4	47.53

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	GO:A0A078G5F1	UniProt:A0A078G5F1
EnsemblPlants:CDY20681	ProteinID:CDY20681	ProteinID:CDY20681.1	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00012869001	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987
InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798	PFscan:PS50040	PFscan:PS50404
PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833
SUPFAM:SSF89942	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EE3112	SEG:seg	:

Description

BnaC08g13770DBnaC08g13770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5F1]

Coordinates

chrLK032110:-:630974..635511

Molecular Weight (calculated)

63050.7 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.357

Length

558 amino acids

Sequence
(BLAST)

001: MALVMHSYKG NKNSDKAFIA AEFAGVKIDM PSGFEMGVTN KTPEFLKMNP LGKIPVLETP EGPIFESNAI ARYVSRLNGD NSLNGSSLIE YAHIEQWIDF
101: SSLEIYGNIF NWFVPRMGFM PYSVPGEEAA ISALKRGLEA LNTHLASNTY LVGHSVTLAD IITVCNLNLG FSTVMTKSFT SAFPHVERYF WTLINQPNFK
201: KVVGDVKQTE SVPPIKKAGQ PAKPKEQPKK KEAPAAEAPK AVEEEEAPKP KAKNPLDLLP PSPMVLDEWK RLYSNTKSNF REVAIKGFWD MYDPEGYSLW
301: FCDYKYNDEN MVSFVTLNKV GGFLQRMDLA RKYAFGKMLI CGSEGPFKAK GLWLFRGPEI PKFVMDEVYD MELYEWTKVD ISDEAQKERV SQMIEDAEPF
401: EGEALLDAKC FNKASSVERS RKAEGRDYRY NREKDDRDLG ESARGILRFN CSALRLRLRL CSFVIRIGNI QDGIYCLCPG LSGDSKDASK GAKAESHTSS
501: SKTGTKVILI LVGLVAVAMF SFFLYKLWQK KKRDEQYARL LKLFEEDDEL EVELGLRD

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.