CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06365	Canola	cytosol	98.07	98.55
AT1G09640.1	Thale cress	cytosol	90.84	91.06
CDY31074	Canola	cytosol	89.88	90.53
CDY50887	Canola	cytosol	87.95	88.38
CDX93494	Canola	cytosol	87.71	88.14
CDY20681	Canola	cytosol	89.4	66.49
CDY04368	Canola	cytosol	29.64	46.77

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	GO:A0A078GBB1	UniProt:A0A078GBB1
EnsemblPlants:CDY22629	ProteinID:CDY22629	ProteinID:CDY22629.1	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00019298001	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647
PFAM:PF02798	PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2
SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EB4495
SEG:seg	:	:	:	:	:

Description

BnaC08g42630DBnaC08g42630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBB1]

Coordinates

chrLK032134:-:168869..171584

Molecular Weight (calculated)

46580.0 Da

IEP (calculated)

5.580

GRAVY (calculated)

-0.299

Length

415 amino acids

Sequence
(BLAST)

001: MALVLHTYKG NKNADKALIA AEYVGVKIDV PSDFAMGVTN KTPEFLKMNP MGKVPVLETP EGPVFESNAI ARYVSRLNGE NSLNGSSLIE YAHVEQWSDF
101: STLEIYGNIL KWFGPRMGFM PYSAPGEEAA ISALKRGLDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKSFT SAFPHVERYF WTVINQPNFK
201: KVVGDVKQTE AVPPIASKKA AQPAKPKEEP KKKAAPAAEA PKPVEEAEEA PKPKAKNPLD LLPPSPMVLD EWKRLYSNTK SNFREVAIKG FWDMYDPEGY
301: SLWFCDYKYN DENMVSFVTL NKVGGFLQRM DLARKYAFGK MLICGSEAPF KVKGLWLFRG PEIPKFIMDE VYDMELYEWT KVDISDEAQK ERVSQMIEDA
401: EPFEGEALLD AKCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.