CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15790_001	Banana	cytosol	7.98	47.73
GSMUA_Achr9P19980_001	Banana	cytosol	6.84	45.0
GSMUA_Achr8P15800_001	Banana	extracellular	9.51	36.76
CDY31074	Canola	cytosol	46.77	29.85
CDX93494	Canola	cytosol	46.77	29.78
CDY22629	Canola	cytosol	46.77	29.64
CDY50887	Canola	cytosol	46.39	29.54
CDY06365	Canola	cytosol	45.63	29.06
KRH01866	Soybean	nucleus	44.49	27.86
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	43.35	27.14
Os02t0220600-02	Rice	extracellular, plasma membrane	41.06	25.84
EES04758	Sorghum	plastid	40.68	25.6
KRH06050	Soybean	endoplasmic reticulum	40.68	25.54
Os02t0220500-01	Rice	plasma membrane	39.92	25.36
Solyc11g028100.1.1	Tomato	cytosol, unclear	39.92	25.36
KRH26289	Soybean	nucleus	40.3	25.36
Os06t0571400-01	Rice	plasma membrane	39.16	24.76
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	38.4	24.63
Zm00001d016358_P006	Maize	cytosol	39.54	24.53
EER89969	Sorghum	cytosol	38.78	24.46
HORVU7Hr1G087050.1	Barley	cytosol	38.4	24.46
Zm00001d053576_P001	Maize	endoplasmic reticulum	40.3	24.26
Zm00001d036959_P003	Maize	cytosol	38.4	24.22
TraesCS7A01G362900.1	Wheat	golgi	37.64	23.97
TraesCS7D01G360200.2	Wheat	nucleus, plastid	37.64	23.97
Solyc06g011280.2.1	Tomato	extracellular	37.26	23.73
PGSC0003DMT400040683	Potato	cytosol	37.26	23.73
TraesCS6B01G215000.1	Wheat	cytosol	38.02	23.64
Zm00001d046352_P001	Maize	plasma membrane	37.26	23.5
PGSC0003DMT400065617	Potato	cytosol	36.88	23.43
TraesCS6A01G186000.1	Wheat	cytosol	36.5	22.7
CDY20681	Canola	cytosol	47.53	22.4
VIT_12s0035g01120.t01	Wine grape	plastid	23.19	13.44

Protein Annotations

Gene3D:1.20.1050.10	Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078EXP4	EnsemblPlants:CDY04368	ProteinID:CDY04368
ProteinID:CDY04368.1	ncoils:Coil	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00118297001	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045
InterPro:IPR010987	InterPro:IPR036433	PFAM:PF00647	PFscan:PS50040	PFscan:PS50404	PFscan:PS50405
PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SUPFAM:SSF47616	SUPFAM:SSF89942	TMHMM:TMhelix	UniParc:UPI0004EDFE63
SEG:seg	:	:	:	:	:

Description

BnaC04g18250D

Coordinates

chrLK031952:+:587954..590109

Molecular Weight (calculated)

29807.7 Da

IEP (calculated)

4.676

GRAVY (calculated)

-0.183

Length

263 amino acids

Sequence
(BLAST)

001: MYILSNAITQ YVCRVNGDNS LNGSFIIDYA HIEQWIDFAS LEIDANMLRW FTPRMGYVAF SAPAEEAAIS GLKRGLDALN THLASDTYLV GQSITLTDIT
101: EAVPRILSKE AAQPTKPKEE TKKAAPPAEE PKLAKEEKAT KLDEEYPIDF LPPSPMVLDE WKRLYSNTKS NNREVVIKVY ELVIIFFLLT FTLVLNTYKG
201: NKEAYKALIV AEYADVMIEE ASNFQMGVTN KSPEFLKLNP IREAHIEQWI DFSSLEINAN MLR

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.