Factsheet for PGSC0003DMT400065617

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040683	Potato	cytosol	94.69	94.92
Solyc11g028100.1.1	Tomato	cytosol, unclear	91.06	91.06
Os02t0220500-01	Rice	plasma membrane	78.02	78.02
VIT_18s0041g01900.t01	Wine grape	cytosol	78.99	77.12
Os02t0220600-02	Rice	extracellular, plasma membrane	76.57	75.84
EES04758	Sorghum	plastid	75.85	75.12
GSMUA_Achr9P11470_001	Banana	cytosol	69.57	75.0
VIT_12s0035g01130.t01	Wine grape	cytosol	78.26	74.83
GSMUA_Achr9P25030_001	Banana	cytosol	65.94	74.59
KRH01866	Soybean	nucleus	75.6	74.52
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	74.88	73.81
KRH06050	Soybean	endoplasmic reticulum	74.64	73.75
Zm00001d046352_P001	Maize	plasma membrane	73.91	73.38
EER89969	Sorghum	cytosol	73.67	73.14
Zm00001d016358_P006	Maize	cytosol	74.88	73.11
Os06t0571400-01	Rice	plasma membrane	73.43	73.08
KRH26289	Soybean	nucleus	73.43	72.73
AT1G09640.1	Thale cress	cytosol	72.71	72.71
Bra031676.1-P	Field mustard	cytosol	72.22	72.4
Zm00001d036959_P003	Maize	cytosol	72.71	72.18
Bra020005.1-P	Field mustard	cytosol	71.98	72.16
AT1G57720.1	Thale cress	cytosol	71.74	71.91
Zm00001d053576_P001	Maize	endoplasmic reticulum	75.36	71.4
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	68.84	69.51
TraesCS6B01G215000.1	Wheat	cytosol	70.53	69.03
TraesCS6A01G186000.1	Wheat	cytosol	70.29	68.79
TraesCS7D01G360200.2	Wheat	nucleus, plastid	68.36	68.52
HORVU7Hr1G087050.1	Barley	cytosol	68.12	68.28
TraesCS7A01G362900.1	Wheat	golgi	67.63	67.8
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	13.53	50.91
Bra030790.1-P	Field mustard	cytosol	68.6	50.18
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	43.0	47.47
CDY04368	Canola	cytosol	23.43	36.88

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	UniProt:M1CEC3	PFAM:PF00043
PFAM:PF00647	PFAM:PF02798	EnsemblPlantsGene:PGSC0003DMG400025527	PGSC:PGSC0003DMG400025527	EnsemblPlants:PGSC0003DMT400065617	PFscan:PS50040
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616
SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI0002948667	SEG:seg	:

Description

Elongation factor 1-gamma [Source:PGSC_GENE;Acc:PGSC0003DMG400025527]

Coordinates

chr11:-:16024794..16028039

Molecular Weight (calculated)

47163.8 Da

IEP (calculated)

5.839

GRAVY (calculated)

-0.339

Length

414 amino acids

Sequence
(BLAST)

001: MALILHSTNN NKNASKALIA AEFTGVKVEL AKDFQMGVSN NSPEFLKMNP IGKVPVLETP DGPVFESNAI ARYVTKLKPN NPLFGSSLIE YAQIEQWNDF
101: SATEVDANIG RWLYPRLGYR VYIPAAEEAV VAALKRALGA LNTHLASNTY LVGHLITLAD IIMGCNLSIG FRMIMTKSFT KEFPHVERYF WTVVNQPNFC
201: KILGEVKQAE SIPAVQSKMP AQPEKPKAKE EPKKEVKKEE PSPVEEEVAP KPKAKNPLDL LPPSKMILDD WKRLYSNTKT NFREVAVKGF WDMYDPEGYS
301: LWFCDYKYND ENTVSFVTLN KVGGFLQRMD LVRKYAFGKM LIVGSEAPFK VQGLWLFRGK EIPKFVMEEV YDMELYEWKE VDINDEAQKE RVSQMIEDHE
401: PFEGEALLDA KCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.