CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	95.71	95.71
GSMUA_Achr8P15790_001	Banana	cytosol	9.29	88.64
KRH06050	Soybean	endoplasmic reticulum	84.52	84.73
KRH26289	Soybean	nucleus	84.05	84.45
Os02t0220500-01	Rice	plasma membrane	77.86	78.99
EES04758	Sorghum	plastid	77.14	77.51
Os02t0220600-02	Rice	extracellular, plasma membrane	76.67	77.03
AT1G09640.1	Thale cress	cytosol	75.48	76.57
PGSC0003DMT400040683	Potato	cytosol	75.24	76.51
AT1G57720.1	Thale cress	cytosol	74.76	76.03
Bra020005.1-P	Field mustard	cytosol	74.76	76.03
Bra031676.1-P	Field mustard	cytosol	74.52	75.79
Solyc06g011280.2.1	Tomato	extracellular	74.52	75.79
Os06t0571400-01	Rice	plasma membrane	75.0	75.72
PGSC0003DMT400065617	Potato	cytosol	74.52	75.6
Solyc11g028100.1.1	Tomato	cytosol, unclear	74.52	75.6
GSMUA_Achr9P19980_001	Banana	cytosol	7.14	75.0
Zm00001d016358_P006	Maize	cytosol	75.24	74.53
EER89969	Sorghum	cytosol	73.81	74.34
Zm00001d046352_P001	Maize	plasma membrane	73.57	74.1
Zm00001d036959_P003	Maize	cytosol	73.1	73.62
Zm00001d053576_P001	Maize	endoplasmic reticulum	75.71	72.77
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	68.1	69.76
TraesCS6B01G215000.1	Wheat	cytosol	70.24	69.74
TraesCS7D01G360200.2	Wheat	nucleus, plastid	68.57	69.73
TraesCS7A01G362900.1	Wheat	golgi	68.33	69.49
HORVU7Hr1G087050.1	Barley	cytosol	68.1	69.25
TraesCS6A01G186000.1	Wheat	cytosol	69.52	69.03
Bra030790.1-P	Field mustard	cytosol	73.33	54.42
VIT_12s0035g01120.t01	Wine grape	plastid	50.95	47.14
GSMUA_Achr8P15800_001	Banana	extracellular	7.38	45.59
CDY04368	Canola	cytosol	27.86	44.49

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	EntrezGene:547637	EMBL:ACUP02010288
InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	EnsemblPlantsGene:GLYMA_17G001400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414
GO:GO:0006749	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
UniProt:I1MQS6	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	EMBL:KM818409
EnsemblPlants:KRH01866	ProteinID:KRH01866	ProteinID:KRH01866.1	ProteinID:KRH01867.1	PFAM:PF00043	PFAM:PF00647
PFAM:PF02798	PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2
SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI00023D5102
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:164384..167121

Molecular Weight (calculated)

47745.3 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.388

Length

420 amino acids

Sequence
(BLAST)

001: MTPLILHAGK TNKNSYKTLI AAEYAGVQVD FAPNFEMGVS NKTPEFLKIN PIGKVPVLET PDGPIFESNA IARYVTRLKG DNTLYGSSLI EYAHIEQWID
101: FSSLEIDANI IKWYAPRVGR GPYLPPAEEA AISALKRALG ALNTHLASNT YLVGHSVTLA DIIMTCNLYL GFANILVKSF TSEFPHVERY FWTLVNQPNF
201: RKIIGQVKQA EAIPPVQSAK KPSQPKESKA KAKDEPKKEA NKVPEKPKEE AEEEAPKPKP KNPLDLLPPS PMILDEWKRL YSNTKTNFRE VAIKGFWDMY
301: DPEGYSLWFC DYKYNDENTV SFVTLNKVGG FLQRMDLARK YAFGKMLVIG SVPPFKVKGL WLFRGQEIPK FVIDECYDME LYEWTKVDIS DEAQKERVNQ
401: MIEDYEPFEG EALLDAKCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.