CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26289	Soybean	nucleus	95.23	95.45
GSMUA_Achr8P15790_001	Banana	cytosol	9.07	86.36
KRH01866	Soybean	nucleus	84.73	84.52
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	83.77	83.57
Os02t0220500-01	Rice	plasma membrane	75.89	76.81
EES04758	Sorghum	plastid	75.66	75.84
Solyc06g011280.2.1	Tomato	extracellular	73.75	74.82
PGSC0003DMT400040683	Potato	cytosol	73.75	74.82
PGSC0003DMT400065617	Potato	cytosol	73.75	74.64
AT1G09640.1	Thale cress	cytosol	73.75	74.64
Bra031676.1-P	Field mustard	cytosol	73.51	74.58
Os06t0571400-01	Rice	plasma membrane	73.99	74.52
EER89969	Sorghum	cytosol	73.99	74.34
AT1G57720.1	Thale cress	cytosol	73.27	74.33
Os02t0220600-02	Rice	extracellular, plasma membrane	73.99	74.16
Solyc11g028100.1.1	Tomato	cytosol, unclear	72.31	73.19
Zm00001d046352_P001	Maize	plasma membrane	72.79	73.14
Zm00001d016358_P006	Maize	cytosol	73.99	73.11
Zm00001d036959_P003	Maize	cytosol	72.55	72.9
Bra020005.1-P	Field mustard	cytosol	71.84	72.88
GSMUA_Achr9P19980_001	Banana	cytosol	6.92	72.5
Zm00001d053576_P001	Maize	endoplasmic reticulum	74.22	71.17
TraesCS6B01G215000.1	Wheat	cytosol	69.45	68.79
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	66.83	68.29
TraesCS7A01G362900.1	Wheat	golgi	67.3	68.28
TraesCS7D01G360200.2	Wheat	nucleus, plastid	67.3	68.28
HORVU7Hr1G087050.1	Barley	cytosol	67.06	68.04
TraesCS6A01G186000.1	Wheat	cytosol	68.5	67.85
Bra030790.1-P	Field mustard	cytosol	70.17	51.94
VIT_12s0035g01120.t01	Wine grape	plastid	51.07	47.14
GSMUA_Achr8P15800_001	Banana	extracellular	6.92	42.65
CDY04368	Canola	cytosol	25.54	40.68

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100787125	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	EMBL:ACUP02009815
EMBL:BT099413	UniProt:C6TNT2	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	EnsemblPlantsGene:GLYMA_16G001900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006412	GO:GO:0006414	GO:GO:0006749	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433
EMBL:KM818408	EnsemblPlants:KRH06050	ProteinID:KRH06050	ProteinID:KRH06050.1	PFAM:PF00043	PFAM:PF00647
PFAM:PF02798	PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2
SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI0001B170D3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:103409..105590

Molecular Weight (calculated)

47590.0 Da

IEP (calculated)

6.108

GRAVY (calculated)

-0.402

Length

419 amino acids

Sequence
(BLAST)

001: MALILHATKA NKNAFKTLIA AEYSGVQVEL APNFEMGVSN RTPEFLKMNP IGKVPVLETP DGPVFESNAI ARYVARLKGD NALFSSSAID NAHIDQWIDF
101: SSLEIDANIM KLYLPRLGFA PYLPPVEEGA NSALKRAFEA LNTHLASNTY LVGHSVTLAD IITTCNLYLG FSQLLVKSFT SEFPHVERYF WTLVNQPNFR
201: KILGQVKQTE SVPPIPSAAK KPSQPKESKP KPKDEPKKAA KPEPKQEAEP EEEAPKPKPK NPLDLLPPSK MILDDWKRLY SNTKTNFREV AIKGFWDMYD
301: PEGYSLWFCD YKYNDENTVS FVTLNKVGGF LQRMDLARKY AFGKMLVIGS QAPFKVKGLW LFRGQEIPKF VIDECYDMEL YDWTKVDISD ETQKERVNQM
401: IEDFEPFEGE SLLDAKCFK

Best Arabidopsis Sequence Match ( AT1G57720.1 )
(BLAST)

001: MALVMHTYKG NKGANKALIA AEYAGVKIEE SADFQMGVTN KSPEFLKMNP IGKVPVLETP EGPIFESNAI ARYVSRKNGD NSLNGSSLIE YAHIEQWIDF
101: SSLEIDANML KWFAPRMGYA PFSAPAEEAA ISALKRGLEA LNTHLASNTF LVGHSVTLAD IVTICNLNLG FATVMTKKFT SAFPHVERYF WTMVNQPEFK
201: KVLGDAKQTE AVPPVPTKKA PQPAKPKEEP KKAAPVAEAP KPAEEEEAPK PKAKNPLDLL PPSPMVLDDW KRLYSNTKSN FREVAIKGFW DMYDPEGYSL
301: WFCDYKYNDE NMVSFVTLNK VGGFLQRMDL ARKYSFGKML ICGSEGPFKV KGLWLFRGPE IPKFIMDEVY DMELYEWTKV DISDEAQKER VSQMIEDAEP
401: FEGEALLDAK CFK

Arabidopsis Description

Probable elongation factor 1-gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.