CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01866	Soybean	nucleus	95.71	95.71
GSMUA_Achr8P15790_001	Banana	cytosol	9.29	88.64
KRH06050	Soybean	endoplasmic reticulum	83.57	83.77
KRH26289	Soybean	nucleus	83.1	83.49
Os02t0220500-01	Rice	plasma membrane	76.43	77.54
PGSC0003DMT400040683	Potato	cytosol	74.52	75.79
Os02t0220600-02	Rice	extracellular, plasma membrane	75.24	75.6
AT1G09640.1	Thale cress	cytosol	74.29	75.36
EES04758	Sorghum	plastid	75.0	75.36
GSMUA_Achr9P19980_001	Banana	cytosol	7.14	75.0
Solyc11g028100.1.1	Tomato	cytosol, unclear	73.81	74.88
PGSC0003DMT400065617	Potato	cytosol	73.81	74.88
Solyc06g011280.2.1	Tomato	extracellular	73.57	74.82
AT1G57720.1	Thale cress	cytosol	73.33	74.58
Bra031676.1-P	Field mustard	cytosol	73.33	74.58
Bra020005.1-P	Field mustard	cytosol	73.33	74.58
Os06t0571400-01	Rice	plasma membrane	73.33	74.04
EER89969	Sorghum	cytosol	72.86	73.38
Zm00001d046352_P001	Maize	plasma membrane	72.62	73.14
Zm00001d036959_P003	Maize	cytosol	72.38	72.9
Zm00001d016358_P006	Maize	cytosol	73.57	72.88
Zm00001d053576_P001	Maize	endoplasmic reticulum	74.05	71.17
TraesCS6B01G215000.1	Wheat	cytosol	69.52	69.03
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	67.38	69.02
TraesCS7D01G360200.2	Wheat	nucleus, plastid	67.86	69.01
TraesCS7A01G362900.1	Wheat	golgi	67.62	68.77
HORVU7Hr1G087050.1	Barley	cytosol	67.38	68.52
TraesCS6A01G186000.1	Wheat	cytosol	68.81	68.32
Bra030790.1-P	Field mustard	cytosol	72.14	53.53
VIT_12s0035g01120.t01	Wine grape	plastid	50.24	46.48
GSMUA_Achr8P15800_001	Banana	extracellular	7.38	45.59
CDY04368	Canola	cytosol	27.14	43.35

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	EMBL:ACUP02004733	InterPro:EF1B_G_C
InterPro:EF1B_G_C_sf	EnsemblPlantsGene:GLYMA_07G273500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0006749
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	UniProt:I1KNS9
InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	EMBL:KM818406	EnsemblPlants:KRH51299
ProteinID:KRH51299	ProteinID:KRH51299.1	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798	PFscan:PS50040
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616
SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI0002337C21	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:44537719..44540524

Molecular Weight (calculated)

47745.3 Da

IEP (calculated)

6.037

GRAVY (calculated)

-0.412

Length

420 amino acids

Sequence
(BLAST)

001: MAPLILHGGK TNKNSYKTLI AAEYAGVQVD FAPNFEMGVS NKTPEFLKIN PIGKVPVLET PDGPVFESNA IARYVTQLKG DNTLYGSSLI EHAHIEQWID
101: FSSLEIDANI IKWYAPRVGR GPYLPPAEEA AISALKRALA ALNTHLASNT YLVGHSVTLA DIIMTCNLYL GFANILVKCF TSEFPHVERY FWTLVNQPNF
201: RKIIGQVKQA ETIPPVQSAK KPSQPKESKP KVKNEPKKEA NKEPEKPKEE AEEEAPKPKA KNPLDLLPPS PMILDEWKRL YSNTKTNFRE VAIKGFWDMY
301: DPEGYSLWFC DYKYNQENTV SFVTLNKVGG FLQRMDLARK YAFGKMLVIG SDPPFKVKGL WLFRGQEIPQ FVIDECYDME LYEWTKVDIS DEPQKERVNQ
401: MIEDCEPFEG EALLDAKCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.