Factsheet for Zm00001d016358_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04758	Sorghum	plastid	91.04	92.34
Os02t0220500-01	Rice	plasma membrane	87.03	89.13
Zm00001d053576_P001	Maize	endoplasmic reticulum	90.57	87.87
Os02t0220600-02	Rice	extracellular, plasma membrane	83.73	84.93
Zm00001d046352_P001	Maize	plasma membrane	80.42	81.77
GSMUA_Achr9P11470_001	Banana	cytosol	73.82	81.51
Zm00001d036959_P003	Maize	cytosol	79.01	80.34
GSMUA_Achr9P25030_001	Banana	cytosol	69.34	80.33
TraesCS6B01G215000.1	Wheat	cytosol	77.36	77.54
VIT_18s0041g01900.t01	Wine grape	cytosol	76.65	76.65
TraesCS6A01G186000.1	Wheat	cytosol	76.42	76.6
VIT_12s0035g01130.t01	Wine grape	cytosol	77.12	75.52
AT1G09640.1	Thale cress	cytosol	73.58	75.36
Solyc11g028100.1.1	Tomato	cytosol, unclear	73.58	75.36
KRH01866	Soybean	nucleus	74.53	75.24
PGSC0003DMT400065617	Potato	cytosol	73.11	74.88
Bra020005.1-P	Field mustard	cytosol	72.64	74.58
AT1G57720.1	Thale cress	cytosol	72.41	74.33
PGSC0003DMT400040683	Potato	cytosol	72.41	74.33
Solyc06g011280.2.1	Tomato	extracellular	72.17	74.09
Bra031676.1-P	Field mustard	cytosol	72.17	74.09
KRH06050	Soybean	endoplasmic reticulum	73.11	73.99
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	72.88	73.57
KRH26289	Soybean	nucleus	72.41	73.44
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	15.09	58.18
Bra030790.1-P	Field mustard	cytosol	70.75	53.0
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	43.87	49.6
CDY04368	Canola	cytosol	24.53	39.54

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100381466	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	UniProt:A0A1D6H6Y0
ProteinID:AQK70538.1	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987
InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798	PFscan:PS50040	PFscan:PS50404
PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833
SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI00084596D0	EnsemblPlantsGene:Zm00001d016358	EnsemblPlants:Zm00001d016358_P006	EnsemblPlants:Zm00001d016358_T006
SEG:seg	:	:	:	:	:

Description

Probable elongation factor 1-gamma 2

Coordinates

chr5:-:159037990..159041603

Molecular Weight (calculated)

48098.9 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.315

Length

424 amino acids

Sequence
(BLAST)

001: MALVLHAGSS NKNAFKTLIA ADYSGIKVEL VKDFQMGVSN KTPEFLKMNP IGKVPVLETP DGPVFESNAI ARYVTRLKAN NPLYGSSLID YAHIEQWMDF
101: AATEVDASIG KWLYPRMGFY PYAAVTEESA IAALKRAFGS LNTHLASNTF LVGHSVTLAD IVLTCNLYMG FSRILTKSFT SEFPHIERYF WTMVNQPNFK
201: KVIGDVKQAE AVPLLPKKIA PAKEQKPKEA KKEAPKPKEA EKPAEEEEAP KPKPKNPLDL LPPSKLILDD WKRLYSNTKT NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENTVSFVTMN KVGGFLQRMD LCRKYAFGKM LVVGSEPPFK VKGLWLFRGP EIPKFVMDEV YDMELYEWTK VDLSDEAQKE RVNAMIEDQE
401: PFEGEALLDA KCFNSGKSCL GFWV

Best Arabidopsis Sequence Match ( AT1G09640.2 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVKGLWLFRG PEIPKFIMDE VYDMELYEWT KVDISDEAQK ERVSQMIEDA EPFEGEALLD AKCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.