Factsheet for PGSC0003DMT400040683

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g011280.2.1	Tomato	extracellular	95.4	95.4
PGSC0003DMT400065617	Potato	cytosol	94.92	94.69
Os02t0220500-01	Rice	plasma membrane	77.72	77.54
VIT_18s0041g01900.t01	Wine grape	cytosol	78.21	76.18
Os02t0220600-02	Rice	extracellular, plasma membrane	76.27	75.36
GSMUA_Achr9P11470_001	Banana	cytosol	69.98	75.26
KRH01866	Soybean	nucleus	76.51	75.24
EES04758	Sorghum	plastid	75.54	74.64
GSMUA_Achr9P25030_001	Banana	cytosol	66.1	74.59
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	75.79	74.52
VIT_12s0035g01130.t01	Wine grape	cytosol	77.97	74.36
KRH06050	Soybean	endoplasmic reticulum	74.82	73.75
AT1G09640.1	Thale cress	cytosol	73.85	73.67
EER89969	Sorghum	cytosol	73.85	73.14
KRH26289	Soybean	nucleus	73.85	72.97
Zm00001d046352_P001	Maize	plasma membrane	73.61	72.9
Bra031676.1-P	Field mustard	cytosol	72.64	72.64
Zm00001d036959_P003	Maize	cytosol	73.12	72.42
Zm00001d016358_P006	Maize	cytosol	74.33	72.41
Os06t0571400-01	Rice	plasma membrane	72.88	72.36
Bra020005.1-P	Field mustard	cytosol	72.16	72.16
AT1G57720.1	Thale cress	cytosol	71.19	71.19
Zm00001d053576_P001	Maize	endoplasmic reticulum	74.82	70.71
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	69.49	70.0
TraesCS7D01G360200.2	Wheat	nucleus, plastid	69.25	69.25
HORVU7Hr1G087050.1	Barley	cytosol	69.01	69.01
TraesCS6B01G215000.1	Wheat	cytosol	70.22	68.56
TraesCS7A01G362900.1	Wheat	golgi	68.52	68.52
TraesCS6A01G186000.1	Wheat	cytosol	69.98	68.32
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	14.29	53.64
Bra030790.1-P	Field mustard	cytosol	69.01	50.35
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	42.37	46.67
CDY04368	Canola	cytosol	23.73	37.26

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	ProteinID:ABA81876	ProteinID:ABA81876.1
ProteinID:ABB87108	ProteinID:ABB87108.1	EMBL:DQ207868	EMBL:DQ241837	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	UniProt:M1BA84	PFAM:PF00043
PFAM:PF00647	PFAM:PF02798	EnsemblPlantsGene:PGSC0003DMG400015731	PGSC:PGSC0003DMG400015731	EnsemblPlants:PGSC0003DMT400040683	PFscan:PS50040
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616
SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI0002964A39	SEG:seg	:

Description

Elongation factor 1-gamma [Source:PGSC_GENE;Acc:PGSC0003DMG400015731]

Coordinates

chr6:-:12084551..12087585

Molecular Weight (calculated)

47045.6 Da

IEP (calculated)

5.591

GRAVY (calculated)

-0.358

Length

413 amino acids

Sequence
(BLAST)

001: MALILHSTNN KNTSKALIAA EYTGVKVDLA KDFQMGVSNK TPEFLEMNPI GKVPVLQTPD GPVFESNAIA RYVTKTKPDN PLFGSSLIEY AQIEQWNDFS
101: ATEVDANIAR WLYPRLGYGV YIPQAEEGAV AALKRALGAL NTHLASNTYL VGHCITLADI IMVCNLSIGF RMIMTKSFTK EFPHVERYFW TVVNQPNFCK
201: ILGEVKQAES IPAVQSKMPA QPEKPKAKEE PKKEVKKEEP SPVEEEVAPK PKAKNPLDLL PPSKMILDDW KRLYSNTKTN FREVAVKGFW DMYDPEGYSL
301: WFCDYKYNDE NTVSFVTLNK VGGFLQRMDL VRKYAFGKML IVGSEAPFKV QGLWLFRGKE IPKFVMDEVY DMELYEWKEV DINDEAQKER VSQMIEDHEP
401: FEGQALLDAK CFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.