Factsheet for TraesCS6A01G186000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G215000.1	Wheat	cytosol	95.27	95.27
Os02t0220500-01	Rice	plasma membrane	81.09	82.85
Os02t0220600-02	Rice	extracellular, plasma membrane	81.32	82.3
EES04758	Sorghum	plastid	78.49	79.43
GSMUA_Achr9P11470_001	Banana	cytosol	71.39	78.65
GSMUA_Achr9P25030_001	Banana	cytosol	66.67	77.05
Zm00001d016358_P006	Maize	cytosol	76.6	76.42
TraesCS7A01G362900.1	Wheat	golgi	74.47	76.27
Zm00001d053576_P001	Maize	endoplasmic reticulum	77.78	75.29
VIT_18s0041g01900.t01	Wine grape	cytosol	71.63	71.46
Solyc11g028100.1.1	Tomato	cytosol, unclear	69.74	71.26
AT1G57720.1	Thale cress	cytosol	68.79	70.46
PGSC0003DMT400065617	Potato	cytosol	68.79	70.29
AT1G09640.1	Thale cress	cytosol	68.56	70.05
PGSC0003DMT400040683	Potato	cytosol	68.32	69.98
Bra031676.1-P	Field mustard	cytosol	68.32	69.98
KRH01866	Soybean	nucleus	69.03	69.52
VIT_12s0035g01130.t01	Wine grape	cytosol	71.16	69.52
KRH26289	Soybean	nucleus	68.32	69.14
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	68.32	68.81
Solyc06g011280.2.1	Tomato	extracellular	67.14	68.77
Bra020005.1-P	Field mustard	cytosol	66.9	68.52
KRH06050	Soybean	endoplasmic reticulum	67.85	68.5
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	14.42	55.45
Bra030790.1-P	Field mustard	cytosol	65.01	48.59
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	41.37	46.67
CDY04368	Canola	cytosol	22.7	36.5

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647
PFAM:PF02798	PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2
SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	EnsemblPlantsGene:TraesCS6A01G186000
EnsemblPlants:TraesCS6A01G186000.1	TIGR:cd03044	TIGR:cd03181	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:+:219634791..219636978

Molecular Weight (calculated)

48053.9 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.321

Length

423 amino acids

Sequence
(BLAST)

001: MALVLHAGSG NKNVFKALIA AEYSGVNVEL VKDFQMGVSN HTPDFLKMNP IGKVSVLETT GGPVFKSNAI ARYVARMKAD NPLYGSSLVE YSHIEQWIDF
101: STTEVDANIG KWLYPRLGFY PYVAVIEDTF ITALKRALGA LDTHLASNTY LVGHSVTLAD IVMACNLYHG FTRIMTKSFT SEFPHVERYF WTMVNQPNMK
201: KVMGDVKQAE SVPPVQNKAA APKEQKPKDA KKETKKKEAK KEAQKLEPVE KAEEEEAAPK PKPKNALDLL PPSKMILDEW KKLYSNTKTN FREVAIKGFW
301: DMYDPEGYSL WFCDFKYNEE NTVSFVTMNK VGGFLQRMDL CRKYAFWKML VIGSEPPFKV KGLWLFRGPE IPQFVMDEVY DMALYDWAKV DLSDAAQKER
401: VSAMIEDLEP FEGEALLDAK CFK

Best Arabidopsis Sequence Match ( AT1G09640.2 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVKGLWLFRG PEIPKFIMDE VYDMELYEWT KVDISDEAQK ERVSQMIEDA EPFEGEALLD AKCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.