Factsheet for VIT_18s0041g01900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g01130.t01	Wine grape	cytosol	87.26	85.45
Os02t0220500-01	Rice	plasma membrane	78.77	80.68
GSMUA_Achr9P25030_001	Banana	cytosol	69.58	80.6
Solyc11g028100.1.1	Tomato	cytosol, unclear	78.07	79.95
GSMUA_Achr9P11470_001	Banana	cytosol	72.41	79.95
EES04758	Sorghum	plastid	78.77	79.9
EER89969	Sorghum	cytosol	78.3	79.62
PGSC0003DMT400065617	Potato	cytosol	77.12	78.99
Os02t0220600-02	Rice	extracellular, plasma membrane	77.83	78.95
Zm00001d046352_P001	Maize	plasma membrane	77.36	78.66
PGSC0003DMT400040683	Potato	cytosol	76.18	78.21
Zm00001d036959_P003	Maize	cytosol	76.65	77.94
Solyc06g011280.2.1	Tomato	extracellular	75.71	77.72
Os06t0571400-01	Rice	plasma membrane	76.18	77.64
Zm00001d016358_P006	Maize	cytosol	76.65	76.65
AT1G57720.1	Thale cress	cytosol	74.29	76.27
AT1G09640.1	Thale cress	cytosol	73.82	75.6
Bra020005.1-P	Field mustard	cytosol	73.58	75.54
Zm00001d053576_P001	Maize	endoplasmic reticulum	77.83	75.51
Bra031676.1-P	Field mustard	cytosol	73.11	75.06
TraesCS6B01G215000.1	Wheat	cytosol	71.93	72.1
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	69.58	71.95
TraesCS7D01G360200.2	Wheat	nucleus, plastid	69.81	71.67
TraesCS6A01G186000.1	Wheat	cytosol	71.46	71.63
TraesCS7A01G362900.1	Wheat	golgi	69.58	71.43
HORVU7Hr1G087050.1	Barley	cytosol	69.1	70.94
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	15.8	60.91
Bra030790.1-P	Field mustard	cytosol	70.99	53.18
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	43.87	49.6
VIT_12s0035g01120.t01	Wine grape	plastid	52.12	48.68

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100246571	wikigene:100246571	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10
ProteinID:CCB61635	ProteinID:CCB61635.1	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	UniProt:F6I455	EMBL:FN596744
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0006749	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987
InterPro:IPR036433	EntrezGene:LOC100246571	wikigene:LOC100246571	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798
PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183
SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	TIGR:TC54619	InterPro:Thioredoxin-like_sf	UniParc:UPI000210A86E
ArrayExpress:VIT_18s0041g01900	EnsemblPlantsGene:VIT_18s0041g01900	EnsemblPlants:VIT_18s0041g01900.t01	RefSeq:XP_002278756	RefSeq:XP_002278756.2	SEG:seg

Description

No Description!

Coordinates

chr18:-:26917652..26938115

Molecular Weight (calculated)

48313.2 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.384

Length

424 amino acids

Sequence
(BLAST)

001: MALVLHAGNT NKNAFKALIA AEYSGVKVEL VKNFEMGVSN KSPEFLKMNP IGKVPVLETP DGPVFESNAI ARYVTRLKAD NPLYGSTLIE YAHIEQWIDF
101: GSLEIDANIL RWFIPRIGFA VYLPPAEEAA ISALKRALGA LNTHLASNTY LVGHSVTLAD IIMTCNLVMG FSRVMTKSFT SEFPHVERYF WTMVNQPNFR
201: KILGEVKQAE SVPPVQSAKK PSQPKEPKHK DEPKKEAKKE AKKEPVKPKV AEAAEEEEAP KPKPKNPLDL LPPSKMVLDD WKRLYSNTKT NFREVAIKGF
301: WDMYDPEGYS LWFCDYKYND ENTVSFVTLN KVTGFLQRMD LARKYAFGKM LIVGSEAPFK VKGLWLFRGQ EIPQFVIDEC YDMELYEWKK VDLSDEAQKE
401: RVNQMIEDQE PFEGEALLDA KCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.