Factsheet for VIT_12s0035g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15790_001	Banana	cytosol	8.59	88.64
GSMUA_Achr9P19980_001	Banana	cytosol	6.39	72.5
VIT_12s0035g01130.t01	Wine grape	cytosol	54.85	57.51
VIT_18s0041g01900.t01	Wine grape	cytosol	48.68	52.12
KRH26289	Soybean	nucleus	47.58	51.67
KRH06050	Soybean	endoplasmic reticulum	47.14	51.07
KRH01866	Soybean	nucleus	47.14	50.95
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	46.48	50.24
Bra031676.1-P	Field mustard	cytosol	44.71	49.15
AT1G57720.1	Thale cress	cytosol	44.27	48.67
AT1G09640.1	Thale cress	cytosol	44.05	48.31
Bra020005.1-P	Field mustard	cytosol	43.61	47.94
Bra030790.1-P	Field mustard	cytosol	41.19	33.04
CDY04368	Canola	cytosol	13.44	23.19
GSMUA_Achr8P15800_001	Banana	extracellular	1.76	11.76

Protein Annotations

Gene3D:1.25.40.420	MapMan:17.5.1.2.2	MapMan:19.2.2.8.2.2.2	Gene3D:3.30.70.1010	InterPro:BACK	ProteinID:CCB55042
ProteinID:CCB55042.1	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	UniProt:F6HK39	EMBL:FN595990	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0006749	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001662	InterPro:IPR036433	PFAM:PF00647
PFAM:PF07707	PFscan:PS50040	PANTHER:PTHR44372	PANTHER:PTHR44372:SF1	SMART:SM01183	SUPFAM:SSF89942
UniParc:UPI00021087F0	ArrayExpress:VIT_12s0035g01120	EnsemblPlantsGene:VIT_12s0035g01120	EnsemblPlants:VIT_12s0035g01120.t01	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:20919161..20927430

Molecular Weight (calculated)

52144.7 Da

IEP (calculated)

8.414

GRAVY (calculated)

-0.473

Length

454 amino acids

Sequence
(BLAST)

001: MNTPSSTSKI TSPKISPFLS SHTLLLSHLW LAPQAKEYSI KISPKTHLKS TLSANRKRFS RISLLYSALM VETVEPLTDA TKQYLASRYK DTTKFQEEAM
101: ALPLVKIEAV LSSDDLQVAS EDAVYDFVSK WAWAQYPKLE ERHEILGTRL GCFIQFSYVT CRKLKKVLTC NDFDQDLTSK AVLEAPFFKA DAPHRQRGLA
201: AEDTALIYHC FVERAYKYRS VKVVEFEFPR QPKILGEVKQ TASVPPVSSA KKPALPKEHA KPKHKDEPKK EVKEPAKPKE APVGEEEEAP KPKPKNPLDL
301: LPPSKMILDE WKRLYSNTKT NFREVAIKGF WDMYDPEGYS LWFCDYKYNA ENTVSFVTLI KVDGFLQRMD LAHKYAFGKM LVIGSEAPFK VKGLWLFRGQ
401: EIPQFIIDEC YDMEHYEWKK VDISDEAQKG RVIQMIEDQE PFEGEALLDA KCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.