CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161
mitochondrion: 25806999
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06050	Soybean	endoplasmic reticulum	95.45	95.23
GSMUA_Achr8P15790_001	Banana	cytosol	9.33	88.64
KRH01866	Soybean	nucleus	84.45	84.05
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	83.49	83.1
EES04758	Sorghum	plastid	76.32	76.32
Os02t0220500-01	Rice	plasma membrane	75.12	75.85
GSMUA_Achr9P19980_001	Banana	cytosol	7.18	75.0
Bra031676.1-P	Field mustard	cytosol	73.92	74.82
Os02t0220600-02	Rice	extracellular, plasma membrane	74.64	74.64
Os06t0571400-01	Rice	plasma membrane	74.16	74.52
AT1G57720.1	Thale cress	cytosol	73.21	74.09
AT1G09640.1	Thale cress	cytosol	73.21	73.91
EER89969	Sorghum	cytosol	73.68	73.86
PGSC0003DMT400040683	Potato	cytosol	72.97	73.85
Solyc06g011280.2.1	Tomato	extracellular	72.97	73.85
PGSC0003DMT400065617	Potato	cytosol	72.73	73.43
Zm00001d046352_P001	Maize	plasma membrane	72.73	72.9
Zm00001d036959_P003	Maize	cytosol	72.73	72.9
Bra020005.1-P	Field mustard	cytosol	71.77	72.64
Zm00001d016358_P006	Maize	cytosol	73.44	72.41
Solyc11g028100.1.1	Tomato	cytosol, unclear	71.29	71.98
Zm00001d053576_P001	Maize	endoplasmic reticulum	73.92	70.71
TraesCS6B01G215000.1	Wheat	cytosol	70.1	69.27
TraesCS7A01G362900.1	Wheat	golgi	67.94	68.77
TraesCS7D01G360200.2	Wheat	nucleus, plastid	67.94	68.77
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	67.22	68.54
TraesCS6A01G186000.1	Wheat	cytosol	69.14	68.32
HORVU7Hr1G087050.1	Barley	cytosol	67.22	68.04
Bra030790.1-P	Field mustard	cytosol	69.86	51.59
VIT_12s0035g01120.t01	Wine grape	plastid	51.67	47.58
GSMUA_Achr8P15800_001	Banana	extracellular	7.18	44.12
CDY04368	Canola	cytosol	25.36	40.3

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100795680	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	EMBL:ACUP02007703
InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	EnsemblPlantsGene:GLYMA_12G165500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414
GO:GO:0006749	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
UniProt:I1LTA4	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	EMBL:KM818407
EnsemblPlants:KRH26289	ProteinID:KRH26289	ProteinID:KRH26289.1	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798
PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183
SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI0001BA85AC	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:31957460..31959698

Molecular Weight (calculated)

47470.0 Da

IEP (calculated)

5.827

GRAVY (calculated)

-0.380

Length

418 amino acids

Sequence
(BLAST)

001: MALILHATKT NKNAFKTLIA AEYSGVQVEL APNFEMGVSN KTPEFLKMNP IGKVPVLETP DGPVFESNAI ARYVARLKGD NALFSSSAID NAHIDQWIDF
101: SSLEIDANLM KLLLPRLGFA PYLPPVEEGA NSALKRAFEA LNTHLASNTY LVGHSVTLAD IITTCNLYLG FSQLLVKSFT SEFPHVERYF WTLVNQPNFR
201: KILGQVKQTE AVPPIPSAKK PSQSKESKPK PKDEPKKVAK PEPKEVAEPE EEAPKPKPKN PLDLLPPSKM ILDEWKRLYS NTKTNFREVA IKGFWDMYDP
301: EGYSLWFCDY KYNDENSVSF VTLNKVGGFL QRMDLARKYA FGKMLVIGSQ APFKVKGLWL FRGQEIPQFV IDECYDMELY DWTKVDISDE TQKERVNQMI
401: EDYEPFEGEP LLDAKCFK

Best Arabidopsis Sequence Match ( AT1G57720.1 )
(BLAST)

001: MALVMHTYKG NKGANKALIA AEYAGVKIEE SADFQMGVTN KSPEFLKMNP IGKVPVLETP EGPIFESNAI ARYVSRKNGD NSLNGSSLIE YAHIEQWIDF
101: SSLEIDANML KWFAPRMGYA PFSAPAEEAA ISALKRGLEA LNTHLASNTF LVGHSVTLAD IVTICNLNLG FATVMTKKFT SAFPHVERYF WTMVNQPEFK
201: KVLGDAKQTE AVPPVPTKKA PQPAKPKEEP KKAAPVAEAP KPAEEEEAPK PKAKNPLDLL PPSPMVLDDW KRLYSNTKSN FREVAIKGFW DMYDPEGYSL
301: WFCDYKYNDE NMVSFVTLNK VGGFLQRMDL ARKYSFGKML ICGSEGPFKV KGLWLFRGPE IPKFIMDEVY DMELYEWTKV DISDEAQKER VSQMIEDAEP
401: FEGEALLDAK CFK

Arabidopsis Description

Probable elongation factor 1-gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.