Factsheet for Zm00001d046352_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89969	Sorghum	cytosol	96.64	96.64
Zm00001d036959_P003	Maize	cytosol	94.96	94.96
Os06t0571400-01	Rice	plasma membrane	84.89	85.1
Zm00001d016358_P006	Maize	cytosol	81.77	80.42
GSMUA_Achr9P11470_001	Banana	cytosol	72.9	79.17
GSMUA_Achr9P25030_001	Banana	cytosol	69.3	78.96
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	76.98	78.29
TraesCS7D01G360200.2	Wheat	nucleus, plastid	76.98	77.72
TraesCS7A01G362900.1	Wheat	golgi	76.98	77.72
HORVU7Hr1G087050.1	Barley	cytosol	76.74	77.48
VIT_18s0041g01900.t01	Wine grape	cytosol	78.66	77.36
Zm00001d053576_P001	Maize	endoplasmic reticulum	81.06	77.35
Bra031676.1-P	Field mustard	cytosol	73.62	74.33
Solyc11g028100.1.1	Tomato	cytosol, unclear	73.62	74.15
VIT_12s0035g01130.t01	Wine grape	cytosol	76.98	74.13
PGSC0003DMT400065617	Potato	cytosol	73.38	73.91
AT1G57720.1	Thale cress	cytosol	73.14	73.85
Bra020005.1-P	Field mustard	cytosol	73.14	73.85
PGSC0003DMT400040683	Potato	cytosol	72.9	73.61
KRH01866	Soybean	nucleus	74.1	73.57
Solyc06g011280.2.1	Tomato	extracellular	72.42	73.12
AT1G09640.1	Thale cress	cytosol	72.42	72.95
KRH06050	Soybean	endoplasmic reticulum	73.14	72.79
KRH26289	Soybean	nucleus	72.9	72.73
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	73.14	72.62
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	14.15	53.64
Bra030790.1-P	Field mustard	cytosol	71.46	52.65
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	43.41	48.27
CDY04368	Canola	cytosol	23.5	37.26

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100282446	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	ProteinID:AQL04116.1
UniProt:B6T7G7	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	EMBL:EU960932	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045
InterPro:IPR010987	InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798	PFscan:PS50040
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616
SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI000182C75A	EnsemblPlantsGene:Zm00001d046352	EnsemblPlants:Zm00001d046352_P001
EnsemblPlants:Zm00001d046352_T001	SEG:seg	:	:	:	:

Description

Elongation factor 1-gamma 3

Coordinates

chr9:-:82889286..82893077

Molecular Weight (calculated)

47269.9 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.363

Length

417 amino acids

Sequence
(BLAST)

001: MALVLHSGAG NKNAFKALIA AEYSGVKVEL TKDFEMGVSN KTPEFLKMNP LGKVPVLETP DGPVFESNAI ARYVARLKDD NPLFGSSRIE QAHVEQWMDF
101: AATEVDPGVG WYLYPRLGYI PYAHTTEETA IASLKRSLGA LNTHLALNTY LVGHSVTLAD IVLTCNLYHG IARILTKSFT SDFPHVERYF WTMVNQPNFK
201: KVIGEVKQAE SVPPVLKKGV PPKESKAKDV KKETPKEAPK PKVVEVPAEE EAPKPKPKNP LDLLPPSKMV LDDWKRLYSN TKTNFREVAI KGFWDMYDPE
301: GYSLWFCDYK YNDENTVSFV TLNKVGGFLQ RMDLCRKYAF GKMLVVGSEP PFKLKGLWLF RGQEVPKFVM DEVYDMELYE WTKVDISDEA QKERVNAMIE
401: DQEPFEGEAL LDAKCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.