Factsheet for TraesCS7B01G266300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid, unclear
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G087050.1	Barley	cytosol	97.8	97.09
TraesCS7D01G360200.2	Wheat	nucleus, plastid	97.56	96.85
TraesCS7A01G362900.1	Wheat	golgi	96.83	96.13
EER89969	Sorghum	cytosol	79.51	78.18
Os06t0571400-01	Rice	plasma membrane	79.02	77.88
Zm00001d036959_P003	Maize	cytosol	79.02	77.7
Zm00001d046352_P001	Maize	plasma membrane	78.29	76.98
GSMUA_Achr9P11470_001	Banana	cytosol	70.98	75.78
GSMUA_Achr9P25030_001	Banana	cytosol	66.34	74.32
TraesCS6B01G215000.1	Wheat	cytosol	76.34	74.0
AT1G57720.1	Thale cress	cytosol	70.98	70.46
VIT_18s0041g01900.t01	Wine grape	cytosol	71.95	69.58
Solyc11g028100.1.1	Tomato	cytosol, unclear	70.24	69.57
PGSC0003DMT400040683	Potato	cytosol	70.0	69.49
AT1G09640.1	Thale cress	cytosol	70.0	69.32
Bra031676.1-P	Field mustard	cytosol	69.76	69.25
Solyc06g011280.2.1	Tomato	extracellular	69.51	69.01
PGSC0003DMT400065617	Potato	cytosol	69.51	68.84
Bra020005.1-P	Field mustard	cytosol	69.27	68.77
KRH01866	Soybean	nucleus	69.76	68.1
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	69.02	67.38
KRH26289	Soybean	nucleus	68.54	67.22
VIT_12s0035g01130.t01	Wine grape	cytosol	70.98	67.21
KRH06050	Soybean	endoplasmic reticulum	68.29	66.83
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	13.9	51.82
Bra030790.1-P	Field mustard	cytosol	67.32	48.76
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	41.22	45.07
CDY04368	Canola	cytosol	24.63	38.4

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647
PFAM:PF02798	PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2
SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	EnsemblPlantsGene:TraesCS7B01G266300
EnsemblPlants:TraesCS7B01G266300.1	TIGR:cd03044	TIGR:cd03181	SEG:seg	:	:

Description

No Description!

Coordinates

chr7B:-:488704434..488706511

Molecular Weight (calculated)

46573.0 Da

IEP (calculated)

7.102

GRAVY (calculated)

-0.348

Length

410 amino acids

Sequence
(BLAST)

001: VLHSGSGNKN AFKALIAAEY CGVKVELPKN FEMGVSNKTP EFIKMNPLGK VPVLETPDGA VFESNAIARY VARSKGDNLL WGGSLIEYAR VEQWMDFAAT
101: EVDPNIARWL YPRLGYRAFN AQDEEFGIAG LKRALEALNT HLASNTFLVG HSVTLADIVM TCNLYHGFAR ILTKTFTSEF PHVERYFWTM VNQPNFKKVI
201: GEFKQAEVVP PVQKKAAPAK QKEAKKEAPK AAPKPAVVEA PEEEAPKPKP KNPLDLLPPS KMVLDDWKRL YSNTKSNFHD VAVKGFWEMY DPEGYSLWFC
301: DYKYQEENTV SYVTLNKVGG FLQRMDLCRK YAFGKMLVIG SEAPFKVKGL WLFRGQDIPE FVMKEVYDME LYEWTKVDLS DEAQKKRVEA MIEDLEPFEG
401: QALLDAKCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.