Factsheet for Solyc10g074720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g108610.2.1	cytosol, nucleus
Solyc02g061650.1.1	nucleus
Solyc02g064860.1.1	nucleus
Solyc02g064900.1.1	nucleus
Solyc02g064910.1.1	nucleus
Solyc02g090680.2.1	cytosol, nucleus
Solyc02g092980.2.1	nucleus
Solyc03g120440.1.1	nucleus, nucleus
Solyc04g078310.2.1	nucleus
Solyc04g082430.2.1	endoplasmic reticulum
Solyc04g082840.2.1	cytosol, cytosol, nucleus, nucleus
Solyc05g006050.2.1	endoplasmic reticulum
Solyc05g014760.2.1	nucleus
Solyc05g051410.2.1	cytosol, nucleus
Solyc06g065680.2.1	nucleus
Solyc06g075010.2.1
Solyc07g054950.1.1	nucleus
Solyc07g066660.2.1
Solyc08g081280.2.1	cytosol, nucleus, nucleus
Solyc08g082700.2.1
Solyc09g061280.2.1	nucleus
Solyc09g091280.2.1
Solyc09g091780.2.1	nucleus
Solyc10g074720.1.1	cytosol, nucleus
Solyc10g078330.1.1	cytoskeleton, cytosol
Solyc10g080950.1.1	cytoskeleton, cytosol
Solyc11g005090.1.1	cytoskeleton, cytosol, nucleus
Solyc11g010460.1.1	cytosol, nucleus
Solyc11g069790.1.1
Solyc12g027870.1.1	nucleus
Solyc12g088470.1.1	nucleus
Solyc12g088500.1.1	nucleus
Solyc12g088520.1.1	nucleus
Solyc12g088530.1.1	nucleus
Solyc12g094600.1.1	endoplasmic reticulum
Solyc12g098310.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54180.1	Solyc03g120440.1.1	AT1G15570.1	20407024
AT3G54180.1	Solyc07g066660.2.1	AT1G16330.1	20407024
AT3G54180.1	Solyc07g066660.2.1	AT1G16330.1	20706207
AT3G54180.1	Solyc08g081280.2.1	AT1G18040.1	20407024
AT3G54180.1	Solyc04g082430.2.1	AT1G20610.1	20407024
AT3G54180.1	Solyc12g094600.1.1	AT1G20610.1	20407024
AT3G54180.1	Solyc04g082840.2.1	AT1G20930.1	20407024
AT3G54180.1	Solyc04g082840.2.1	AT1G20930.1	20407024
AT3G54180.1	Solyc11g005090.1.1	AT1G44110.1	20407024
AT3G54180.1	Solyc11g005090.1.1	AT1G44110.1	20407024
AT3G54180.1	Solyc11g005090.1.1	AT1G44110.1	20407024
AT3G54180.1	Solyc08g082700.2.1	AT1G64520.1	17426018
AT3G54180.1	Solyc08g081280.2.1	AT1G66750.1	20407024
AT3G54180.1	Solyc08g081280.2.1	AT1G66750.1	20407024
AT3G54180.1	Solyc05g014760.2.1	AT1G67580.1	20407024
AT3G54180.1	Solyc05g006050.2.1	AT1G70210.1	12857813
AT3G54180.1	Solyc05g006050.2.1	AT1G70210.1	20407024
AT3G54180.1	Solyc04g082840.2.1	AT1G76540.1	20407024
AT3G54180.1	Solyc04g082840.2.1	AT1G76540.1	20407024
AT3G54180.1	Solyc03g120440.1.1	AT1G80370.1	20407024
AT3G54180.1	Solyc02g061650.1.1	AT2G17620.1	20407024
AT3G54180.1	Solyc06g075010.2.1	AT2G28000.1	17426018
AT3G54180.1	Solyc11g069790.1.1	AT2G28000.1	17426018
AT3G54180.1	Solyc09g091780.2.1	AT2G32710.1	20407024
AT3G54180.1	Solyc12g098310.1.1	AT2G32710.1	20407024
AT3G54180.1	Solyc09g091280.2.1	AT3G12280.1	20706207
AT3G54180.1	Solyc01g108610.2.1	AT3G19150.1	20407024
AT3G54180.1	Solyc02g090680.2.1	AT3G19150.1	20407024
AT3G54180.1	Solyc01g108610.2.1	AT3G19150.1	20407024
AT3G54180.1	Solyc02g090680.2.1	AT3G19150.1	20407024
AT3G54180.1	Solyc09g061280.2.1	AT3G24810.1	10758489
AT3G54180.1	Solyc09g061280.2.1	AT3G24810.1	20407024
AT3G54180.1	Solyc02g064860.1.1	AT3G50070.1	20407024
AT3G54180.1	Solyc02g064900.1.1	AT3G50070.1	20407024
AT3G54180.1	Solyc02g064910.1.1	AT3G50070.1	20407024
AT3G54180.1	Solyc02g092980.2.1	AT3G50070.1	20407024
AT3G54180.1	Solyc10g074720.1.1	AT3G54180.1	20407024
AT3G54180.1	Solyc10g074720.1.1	AT3G54180.1	20407024
AT3G54180.1	Solyc07g054950.1.1	AT4G03270.1	20407024
AT3G54180.1	Solyc10g078330.1.1	AT4G37490.1	12065421
AT3G54180.1	Solyc10g080950.1.1	AT4G37490.1	12065421
AT3G54180.1	Solyc10g078330.1.1	AT5G06150.1	20407024
AT3G54180.1	Solyc10g080950.1.1	AT5G06150.1	20407024
AT3G54180.1	Solyc10g078330.1.1	AT5G06150.1	20407024
AT3G54180.1	Solyc10g080950.1.1	AT5G06150.1	20407024
AT3G54180.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT3G54180.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT3G54180.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT3G54180.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT3G54180.1	Solyc06g065680.2.1	AT5G11300.1	20407024
AT3G54180.1	Solyc04g078310.2.1	AT5G43080.1	20407024
AT3G54180.1	Solyc12g088470.1.1	AT5G43080.1	20407024
AT3G54180.1	Solyc12g088500.1.1	AT5G43080.1	20407024
AT3G54180.1	Solyc12g088520.1.1	AT5G43080.1	20407024
AT3G54180.1	Solyc12g088530.1.1	AT5G43080.1	20407024
AT3G54180.1	Solyc12g027870.1.1	AT5G63610.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071215	Potato	cytosol	99.01	99.01
VIT_08s0056g00210.t01	Wine grape	cytosol	91.75	91.75
GSMUA_Achr11P...	Banana	cytosol	85.81	85.81
KRH47306	Soybean	cytosol, nucleus, plasma membrane	87.13	84.08
Bra014835.1-P	Field mustard	cytosol	84.16	83.88
CDX76164	Canola	cytosol	84.16	83.88
AT3G54180.1	Thale cress	cytosol	85.15	83.5
CDY13189	Canola	cytosol	83.5	83.22
CDY07716	Canola	cytosol	84.82	83.17
Os01t0897000-01	Rice	cytosol	83.17	83.17
CDY62439	Canola	cytosol, nucleus, plasma membrane	84.82	82.9
Bra000077.1-P	Field mustard	cytosol, nucleus, plasma membrane	84.82	82.37
AT2G38620.2	Thale cress	cytosol	84.49	82.32
EES15619	Sorghum	cytosol	82.18	80.84
TraesCS5D01G147100.1	Wheat	cytosol	80.53	80.26
TraesCS5B01G144100.2	Wheat	cytosol	80.53	80.26
TraesCS5A01G145500.1	Wheat	cytosol	80.2	79.93
TraesCS4D01G121200.2	Wheat	cytosol	79.87	78.32
TraesCS4B01G123100.1	Wheat	cytosol	79.54	77.99
TraesCS4A01G192300.1	Wheat	cytosol	79.21	77.67
GSMUA_Achr4P02420_001	Banana	cytosol	60.07	75.52
Zm00001d044672_P005	Maize	cytosol	82.18	75.23
HORVU5Hr1G046190.1	Barley	plastid	81.19	65.95
Solyc04g082840.2.1	Tomato	cytosol	66.67	64.13
HORVU4Hr1G023490.7	Barley	endoplasmic reticulum, vacuole	79.21	63.32
Solyc11g070140.1.1	Tomato	cytosol	56.77	58.5
Solyc12g095860.1.1	Tomato	cytosol, nucleus	55.78	57.48
Solyc08g066330.1.1	Tomato	cytosol	53.14	52.44
Solyc12g027870.1.1	Tomato	cytosol	42.24	38.1
Solyc08g067450.1.1	Tomato	cytosol	34.65	33.55
Solyc08g081280.2.1	Tomato	cytosol, nucleus	41.58	30.07
Solyc08g075890.2.1	Tomato	cytosol	37.29	24.94
Solyc08g005470.2.1	Tomato	cytosol	36.63	24.61
Solyc06g083210.2.1	Tomato	cytosol	33.33	23.11
Solyc05g014760.2.1	Tomato	nucleus	44.22	16.56

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.2	MapMan:18.4.3.1.2	Gene3D:3.30.200.20	EMBL:AJ297916	GO:GO:0000082
GO:GO:0000166	GO:GO:0000307	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0004693	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008284
GO:GO:0009987	GO:GO:0010033	GO:GO:0010389	GO:GO:0010468	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	GO:GO:0030332	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF11	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	UniProt:Q9FSH5	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc10g074720.1
EnsemblPlants:Solyc10g074720.1.1	UniParc:UPI00000A6643	:	:	:	:

Description

B1-type cyclin dependent kinase [Source:UniProtKB/TrEMBL;Acc:Q9FSH5]

Coordinates

chr10:+:58355256..58358488

Molecular Weight (calculated)

34331.7 Da

IEP (calculated)

8.315

GRAVY (calculated)

-0.209

Length

303 amino acids

Sequence
(BLAST)

001: MEKYEKLEKV GEGTYGKVYK AKDKATGQLV ALKKTRLEMD EEGIPPTALR EISLLQMLSH SLYIVRLLCV EHIDKNGKPI LYLVFEYLDT DLKKFIDSHR
101: KGPNARALPT ALIQSFLFQL CKGVAHCHSH GVLHRDLKPQ NLLVDKEKGI LKIADLGLGR AFTVPMKSYT HEIVTLWYRA PEVLLGSTHY STAVDMWSVG
201: CIFAEMVRRQ ALFPGDSEFQ QLLHIFRLLG TPTDKQWPGV SSLRDWHVYP QWEPQNLASA VPALGPDGVD LLTKMLKFDP SDRISAKAAL DHPYFDSLDK
301: SQF

Best Arabidopsis Sequence Match ( AT2G38620.2 )
(BLAST)

001: MEKYEKLEKV GEGTYGKVYK AMEKTTGKLV ALKKTRLEMD EEGIPPTALR EISLLQMLSQ SIYIVRLLCV EHVIQSKDST VSHSPKSNLY LVFEYLDTDL
101: KKFIDSHRKG SNPRPLEASL VQRFMFQLFK GVAHCHSHGV LHRDLKPQNL LLDKDKGILK IADLGLSRAF TVPLKAYTHE IVTLWYRAPE VLLGSTHYST
201: AVDIWSVGCI FAEMIRRQAL FPGDSEFQQL LHIFRLLGTP TEQQWPGVMA LRDWHVYPKW EPQDLSRAVP SLSPEGIDLL TQMLKYNPAE RISAKAALDH
301: PYFDSLDKSQ F

Arabidopsis Description

CDKB1-2Cyclin-dependent kinase B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q2V419]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.