Factsheet for Solyc02g064900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g089970.2.1
Solyc01g096700.2.1
Solyc02g067810.1.1
Solyc02g086450.1.1
Solyc03g120010.2.1
Solyc05g050970.2.1
Solyc07g009140.2.1
Solyc08g066330.1.1
Solyc09g055420.1.1
Solyc10g018300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	Solyc03g120010.2.1	AT1G52730.1	20706207
AT3G50070.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT3G50070.1	Solyc05g050970.2.1	AT3G60750.1	20706207
AT3G50070.1	Solyc10g018300.1.1	AT3G60750.1	20706207
AT3G50070.1	Solyc01g089970.2.1	AT4G09320.1	20706207
AT3G50070.1	Solyc09g055420.1.1	AT4G09320.1	20706207
AT3G50070.1	Solyc07g009140.2.1	AT4G24820.1	20706207
AT3G50070.1	Solyc01g096700.2.1	AT5G06110.1	20706207
AT3G50070.1	Solyc02g067810.1.1	AT5G40460.1	20706207
AT3G50070.1	Solyc02g086450.1.1	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g064910.1.1	Tomato	nucleus	67.05	98.72
Solyc02g064860.1.1	Tomato	nucleus	66.19	97.45
PGSC0003DMT400068629	Potato	cytosol	59.83	86.25
PGSC0003DMT400068627	Potato	nucleus	73.7	82.79
PGSC0003DMT400011487	Potato	nucleus	43.64	82.07
Solyc02g092980.2.1	Tomato	nucleus	64.74	62.4
Solyc01g107730.2.1	Tomato	nucleus	45.09	42.86
Solyc12g088650.1.1	Tomato	nucleus	39.88	42.46
AT3G50070.1	Thale cress	nucleus	43.64	41.83
Bra029992.1-P	Field mustard	nucleus	42.2	41.48
CDX83112	Canola	nucleus	42.2	41.48
CDY02095	Canola	nucleus	39.31	41.46
Bra012909.1-P	Field mustard	nucleus	39.31	41.46
CDX68573	Canola	nucleus	41.91	41.19
CDY12825	Canola	nucleus	42.49	41.06
CDY23022	Canola	nucleus	39.02	41.03
CDY01425	Canola	nucleus	41.91	40.96
Solyc04g078470.2.1	Tomato	nucleus	39.6	40.77
KRH04529	Soybean	nucleus	43.64	40.7
KRH77050	Soybean	nucleus, plastid	39.02	40.42
KRH57973	Soybean	nucleus	44.51	40.21
Bra012146.1-P	Field mustard	nucleus	41.04	40.11
KRH28424	Soybean	nucleus	38.15	39.4
CDY30607	Canola	nucleus	39.88	39.09
Bra036051.1-P	Field mustard	nucleus	39.88	39.09
CDY17742	Canola	nucleus	39.31	38.31
CDY30606	Canola	cytosol, nucleus, plastid	18.79	37.79
AT5G67260.2	Thale cress	nucleus	43.64	37.38
Solyc04g076040.2.1	Tomato	nucleus	30.92	30.14
GSMUA_Achr2P05260_001	Banana	nucleus	29.77	29.86
Solyc11g010460.1.1	Tomato	cytosol	26.88	29.81
TraesCS5B01G158400.1	Wheat	cytosol	30.35	29.66
GSMUA_Achr1P09780_001	Banana	cytosol	32.95	29.38
HORVU5Hr1G050270.8	Barley	cytosol	29.77	29.34
GSMUA_Achr4P20220_001	Banana	nucleus	30.64	29.28
TraesCS5D01G165900.1	Wheat	cytosol	29.77	29.1
TraesCS5A01G161000.1	Wheat	cytosol	29.77	29.1
Solyc05g051410.2.1	Tomato	nucleus	28.9	29.07
GSMUA_AchrUn_...	Banana	cytosol	26.59	29.02
Solyc12g087900.1.1	Tomato	nucleus	26.3	28.8
Os09t0111100-01	Rice	cytosol	29.48	28.02
Solyc05g006050.2.1	Tomato	nucleus	27.17	27.89
GSMUA_Achr3P13140_001	Banana	nucleus	32.37	27.52
GSMUA_Achr3P01010_001	Banana	nucleus	32.08	27.27
Zm00001d019696_P001	Maize	cytosol	28.9	25.84
EER96424	Sorghum	cytosol	28.32	25.65
Zm00001d005293_P001	Maize	cytosol	28.03	24.81
Solyc02g079370.2.1	Tomato	nucleus	19.08	22.22
Solyc07g054950.1.1	Tomato	nucleus	19.36	21.61
Solyc03g006670.2.1	Tomato	nucleus	18.5	20.58

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4B6S5	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF242	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc02g064900.1	EnsemblPlants:Solyc02g064900.1.1	UniParc:UPI0002768A04	SEG:seg

Description

No Description!

Coordinates

chr2:-:36000673..36002346

Molecular Weight (calculated)

39145.5 Da

IEP (calculated)

5.875

GRAVY (calculated)

-0.011

Length

346 amino acids

Sequence
(BLAST)

001: MVSHLQVQNI EPQNPILNFD ALLCKEDPLD EGDLGGGYHS DERNWNVKKI SPLLECDMFW EDGEVETLLS KEKLNLFDCT SLVSDGVLLG LRKKSLEWML
101: TVIDHYGFNA LTAVLAVNYF DRFMSRVGFQ KGQPWMSQLV AVACLSIAAK VEEIQVPLLL GLQVSNPKYV FEAKTIKNIE LLVLSTLKWK MNPVTPLSFI
201: DHIIRRFQLM TNLHSEFHRK CENIILGIIT DSRLLHYPPS VFAIATLFYA INEIEPCNAL DYLNQFMAIF KVRKASIDEC HDLILELMGT SGSKICQTNK
301: RKCQSIRGTP DGIIDAYFSC ESSNDSLVVA SSVSSLPDPQ YKRSRT

Best Arabidopsis Sequence Match ( AT5G67260.2 )
(BLAST)

001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRKDF ETRQRVVQVL VLFLSLKMKK IWWTYMYIEG WIQRQQQLRL
401: ERRR

Arabidopsis Description

CYCD3;2CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.