Factsheet for Zm00001d019696_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003257_P002
Zm00001d004025_P001
Zm00001d004033_P001
Zm00001d012956_P001
Zm00001d015611_P002
Zm00001d017117_P001
Zm00001d021149_P001
Zm00001d021526_P001
Zm00001d027373_P003
Zm00001d027655_P001
Zm00001d029968_P001
Zm00001d031485_P001
Zm00001d036905_P002
Zm00001d042902_P001
Zm00001d046445_P002
Zm00001d046912_P001
Zm00001d046962_P002
Zm00001d047097_P001
Zm00001d047099_P001
Zm00001d048394_P001
Zm00001d048497_P002
Zm00001d053930_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	Zm00001d036905_P002	AT1G52730.1	20706207
AT3G50070.1	Zm00001d046445_P002	AT1G52730.1	20706207
AT3G50070.1	Zm00001d015611_P002	AT2G27970.1	20706207
AT3G50070.1	Zm00001d027655_P001	AT2G27970.1	20706207
AT3G50070.1	Zm00001d048394_P001	AT2G27970.1	20706207
AT3G50070.1	Zm00001d027373_P003	AT3G48750.1	20706207
AT3G50070.1	Zm00001d048497_P002	AT3G48750.1	20706207
AT3G50070.1	Zm00001d053930_P001	AT3G48750.1	20706207
AT3G50070.1	Zm00001d046962_P002	AT3G60750.1	20706207
AT3G50070.1	Zm00001d021526_P001	AT4G09320.1	20706207
AT3G50070.1	Zm00001d029968_P001	AT4G09320.1	20706207
AT3G50070.1	Zm00001d003257_P002	AT4G24820.1	20706207
AT3G50070.1	Zm00001d017117_P001	AT4G24820.1	20706207
AT3G50070.1	Zm00001d004025_P001	AT5G06110.1	20706207
AT3G50070.1	Zm00001d004033_P001	AT5G06110.1	20706207
AT3G50070.1	Zm00001d047097_P001	AT5G06110.1	20706207
AT3G50070.1	Zm00001d047099_P001	AT5G06110.1	20706207
AT4G34160.1	Zm00001d031485_P001	AT1G76540.1	12857813
AT4G34160.1	Zm00001d046912_P001	AT1G76540.1	12857813
AT4G34160.1	Zm00001d015611_P002	AT2G27970.1	17426018
AT4G34160.1	Zm00001d027655_P001	AT2G27970.1	17426018
AT4G34160.1	Zm00001d048394_P001	AT2G27970.1	17426018
AT4G34160.1	Zm00001d015611_P002	AT2G27970.1	20706207
AT4G34160.1	Zm00001d027655_P001	AT2G27970.1	20706207
AT4G34160.1	Zm00001d048394_P001	AT2G27970.1	20706207
AT4G34160.1	Zm00001d027373_P003	AT3G48750.1	11096103
AT4G34160.1	Zm00001d048497_P002	AT3G48750.1	11096103
AT4G34160.1	Zm00001d053930_P001	AT3G48750.1	11096103
AT4G34160.1	Zm00001d027373_P003	AT3G48750.1	16517759
AT4G34160.1	Zm00001d048497_P002	AT3G48750.1	16517759
AT4G34160.1	Zm00001d053930_P001	AT3G48750.1	16517759
AT4G34160.1	Zm00001d027373_P003	AT3G48750.1	16766674
AT4G34160.1	Zm00001d048497_P002	AT3G48750.1	16766674
AT4G34160.1	Zm00001d053930_P001	AT3G48750.1	16766674
AT4G34160.1	Zm00001d027373_P003	AT3G48750.1	17426018
AT4G34160.1	Zm00001d048497_P002	AT3G48750.1	17426018
AT4G34160.1	Zm00001d053930_P001	AT3G48750.1	17426018
AT4G34160.1	Zm00001d027373_P003	AT3G48750.1	20706207
AT4G34160.1	Zm00001d048497_P002	AT3G48750.1	20706207
AT4G34160.1	Zm00001d053930_P001	AT3G48750.1	20706207
AT4G34160.1	Zm00001d012956_P001	AT5G02220.1	17426018
AT4G34160.1	Zm00001d042902_P001	AT5G02220.1	17426018
AT4G34160.1	Zm00001d012956_P001	AT5G02220.1	20706207
AT4G34160.1	Zm00001d042902_P001	AT5G02220.1	20706207
AT4G34160.1	Zm00001d021149_P001	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96424	Sorghum	cytosol	88.89	90.05
Zm00001d005293_P001	Maize	cytosol	83.2	82.35
TraesCS5D01G165900.1	Wheat	cytosol	68.73	75.14
TraesCS5A01G161000.1	Wheat	cytosol	68.73	75.14
TraesCS5B01G158400.1	Wheat	cytosol	67.96	74.29
HORVU5Hr1G050270.8	Barley	cytosol	67.18	74.07
Os09t0111100-01	Rice	cytosol	63.57	67.58
GSMUA_Achr1P09780_001	Banana	cytosol	41.6	41.49
GSMUA_Achr4P20220_001	Banana	nucleus	38.76	41.44
GSMUA_AchrUn_...	Banana	cytosol	32.56	39.75
GSMUA_Achr2P05260_001	Banana	nucleus	35.14	39.42
GSMUA_Achr3P13140_001	Banana	nucleus	41.09	39.07
VIT_07s0129g01100.t01	Wine grape	nucleus	29.72	37.22
GSMUA_Achr3P01010_001	Banana	nucleus	36.95	35.14
PGSC0003DMT400039904	Potato	nucleus	28.17	33.85
Solyc12g088650.1.1	Tomato	nucleus	27.91	33.23
PGSC0003DMT400020648	Potato	nucleus	27.65	32.23
KRH05626	Soybean	cytosol	17.83	32.09
KRH04529	Soybean	nucleus	30.75	32.08
KRH28424	Soybean	nucleus	27.65	31.94
KRH57973	Soybean	nucleus	31.27	31.59
VIT_03s0180g00040.t01	Wine grape	nucleus	31.01	31.09
KRH77050	Soybean	nucleus, plastid	26.61	30.84
CDX83112	Canola	nucleus	27.65	30.4
Bra029992.1-P	Field mustard	nucleus	27.65	30.4
Solyc04g078470.2.1	Tomato	nucleus	26.36	30.36
CDY02095	Canola	nucleus	25.58	30.18
CDX68573	Canola	nucleus	27.39	30.11
Bra036051.1-P	Field mustard	nucleus	27.39	30.03
CDY30607	Canola	nucleus	27.39	30.03
KRH15412	Soybean	cytosol	20.93	30.0
Bra012909.1-P	Field mustard	nucleus	25.32	29.88
VIT_18s0001g09920.t01	Wine grape	nucleus	28.68	29.84
CDY23022	Canola	nucleus	25.32	29.79
PGSC0003DMT400066557	Potato	nucleus	27.39	29.61
CDX76265	Canola	nucleus	27.91	29.59
CDY57741	Canola	nucleus	27.91	29.59
CDY17742	Canola	nucleus	27.13	29.58
PGSC0003DMT400068629	Potato	cytosol	18.09	29.17
Solyc01g107730.2.1	Tomato	nucleus	27.39	29.12
KRH52038	Soybean	nucleus	27.13	29.01
Solyc02g092980.2.1	Tomato	nucleus	26.87	28.97
Solyc02g064910.1.1	Tomato	nucleus	17.57	28.94
Solyc02g064860.1.1	Tomato	nucleus	17.57	28.94
Solyc02g064900.1.1	Tomato	nucleus	25.84	28.9
CDX72453	Canola	nucleus	26.87	28.89
Bra034612.1-P	Field mustard	nucleus	27.39	28.8
KRH61348	Soybean	nucleus	25.84	28.65
CDY30606	Canola	cytosol, nucleus, plastid	12.66	28.49
AT4G34160.1	Thale cress	nucleus	27.65	28.46
CDY49278	Canola	nucleus	27.13	28.46
PGSC0003DMT400064307	Potato	nucleus	26.61	28.37
Zm00001d041345_P001	Maize	cytosol	25.58	28.37
Bra017629.1-P	Field mustard	nucleus	26.87	28.26
AT3G50070.1	Thale cress	nucleus	26.36	28.25
CDY01425	Canola	nucleus	25.84	28.25
Bra012146.1-P	Field mustard	nucleus	25.84	28.25
CDY12825	Canola	nucleus	26.1	28.21
CDX75405	Canola	nucleus	27.13	28.15
Bra011501.1-P	Field mustard	nucleus	27.13	28.15
KRG90996	Soybean	nucleus	28.42	27.99
Zm00001d050475_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	22.22	27.83
CDY69708	Canola	nucleus	26.87	27.81
PGSC0003DMT400031329	Potato	nucleus	23.0	27.64
Zm00001d005928_P002	Maize	nucleus	25.58	27.42
KRH35760	Soybean	nucleus	28.17	27.11
Zm00001d018128_P001	Maize	nucleus	24.29	26.48
Zm00001d030894_P002	Maize	nucleus	23.51	26.38
Zm00001d052185_P001	Maize	nucleus	24.29	26.11
Zm00001d013728_P001	Maize	cytosol	24.55	26.03
AT5G67260.2	Thale cress	nucleus	27.13	25.99
PGSC0003DMT400068627	Potato	nucleus	20.67	25.97
PGSC0003DMT400011487	Potato	nucleus	12.14	25.54
Zm00001d031837_P001	Maize	nucleus	26.87	24.53
Zm00001d033330_P001	Maize	nucleus	22.22	24.29
VIT_00s0194g00280.t01	Wine grape	mitochondrion	17.57	23.86
Zm00001d029407_P001	Maize	nucleus	21.19	23.7
Zm00001d022175_P001	Maize	nucleus	23.0	23.61
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	18.09	22.8
Zm00001d048143_P003	Maize	nucleus, peroxisome, plastid	20.16	22.1
Zm00001d044984_P001	Maize	mitochondrion	13.95	19.57
Zm00001d028092_P001	Maize	cytosol	13.18	18.75
Zm00001d020353_P001	Maize	nucleus	16.02	18.73
Zm00001d049334_P001	Maize	mitochondrion	13.7	18.15
Zm00001d048594_P001	Maize	cytosol	18.86	17.18
Zm00001d038580_P001	Maize	plastid	13.95	16.22
Zm00001d003439_P001	Maize	plastid	4.65	14.17

Protein Annotations

EMBL:BT087428	EnsemblPlants:Zm00001d019696_P001	EnsemblPlants:Zm00001d019696_T001	EnsemblPlantsGene:Zm00001d019696	EntrezGene:100502214	Gene3D:1.10.472.10
InterPro:Cyclin-like_sf	InterPro:Cyclin_N	PANTHER:PTHR10177	PANTHER:PTHR10177:SF342	PFAM:PF00134	ProteinID:ONM53557.1
SEG:seg	SUPFAM:SSF47954	UniParc:UPI0000F07F2A	UniProt:C4J9D1	MapMan:13.1.1.1.4	:

Description

cyclin10 cyclin10

Coordinates

chr7:+:51335278..51337377

Molecular Weight (calculated)

40608.0 Da

IEP (calculated)

4.387

GRAVY (calculated)

0.028

Length

387 amino acids

Sequence
(BLAST)

001: MAAFAALFDP LYCPEEHLDL YHEGPVEVVD EQWQDQRGQQ QPAALDDELP ALFEALRDKE GVVLAGDGEE DGYGGSAGRE AAVGWASRAA ARLGFSALTS
101: ALSAAYLDRC FLPGGALRLG DQPWMSRLAA VACVALAAKV EETRVPLLLD LQLCAAASSD ADAADADVFE AKTVRRMELL VLSALGWRMH PVTPFSYLQP
201: VLADAAMRLR NCEAVLLAVM ADWRWPRHRP SAWAAAALLT TAGGGDDDSE LLALINAPED ETAECAKIIS EVTGMSFLVC DVGGMIAGNK RKHAAARMYS
301: PPLSPSGVIG ALSCFSCESS LSATADSRTL ATTAAGVGPW APSAPVSVSS SPEPPGRAPK RAAAAGVPHP LPPDEESRDA WPSTCAA

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.