Factsheet for VIT_18s0001g09920.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g01100.t01	Wine grape	nucleus	52.69	63.43
PGSC0003DMT400039904	Potato	nucleus	51.34	59.32
VIT_03s0180g00040.t01	Wine grape	nucleus	61.02	58.81
PGSC0003DMT400020648	Potato	nucleus	52.42	58.73
KRH61348	Soybean	nucleus	54.57	58.17
Solyc12g088650.1.1	Tomato	nucleus	50.54	57.85
Solyc04g078470.2.1	Tomato	nucleus	51.61	57.14
KRH52038	Soybean	nucleus	54.84	56.35
VIT_00s0194g00280.t01	Wine grape	mitochondrion	29.3	38.25
GSMUA_Achr1P09780_001	Banana	cytosol	36.83	35.31
GSMUA_Achr2P05260_001	Banana	nucleus	32.53	35.07
GSMUA_Achr4P20220_001	Banana	nucleus	32.53	33.43
VIT_18s0001g07220.t01	Wine grape	nucleus	31.72	33.24
GSMUA_Achr3P13140_001	Banana	nucleus	36.02	32.92
GSMUA_AchrUn_...	Banana	cytosol	27.96	32.81
TraesCS5B01G158400.1	Wheat	cytosol	31.18	32.77
HORVU5Hr1G050270.8	Barley	cytosol	30.65	32.48
TraesCS5D01G165900.1	Wheat	cytosol	30.65	32.2
TraesCS5A01G161000.1	Wheat	cytosol	30.65	32.2
GSMUA_Achr3P01010_001	Banana	nucleus	34.95	31.94
Os09t0111100-01	Rice	cytosol	30.38	31.04
VIT_01s0026g00710.t01	Wine grape	nucleus	26.08	29.94
Zm00001d019696_P001	Maize	cytosol	29.84	28.68
VIT_00s0199g00210.t01	Wine grape	nucleus	27.15	28.61
Zm00001d005293_P001	Maize	cytosol	29.84	28.39
VIT_00s0322g00010.t01	Wine grape	nucleus	23.12	28.2
EER96424	Sorghum	cytosol	28.76	28.01
VIT_03s0091g01060.t01	Wine grape	nucleus	26.08	27.4
VIT_18s0001g09160.t01	Wine grape	nucleus	23.12	27.13
VIT_07s0129g00200.t01	Wine grape	nucleus	23.92	26.97
VIT_12s0134g00500.t01	Wine grape	nucleus	21.24	26.87
VIT_08s0007g00790.t01	Wine grape	nucleus	20.16	22.19
VIT_00s0203g00160.t01	Wine grape	cytosol	18.28	21.52

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100253927	wikigene:100253927	MapMan:13.1.1.1.4	EMBL:AM475700	ProteinID:CAN79444
ProteinID:CAN79444.1	ProteinID:CBI19472	ProteinID:CBI19472.3	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	UniProt:E0CPQ9	EMBL:FN595227	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EntrezGene:LOC100253927	wikigene:LOC100253927	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF342	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI00015C7B9E	ArrayExpress:VIT_18s0001g09920	EnsemblPlantsGene:VIT_18s0001g09920	EnsemblPlants:VIT_18s0001g09920.t01	unigene:Vvi.19566	RefSeq:XP_002285001
RefSeq:XP_002285001.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:8294435..8296759

Molecular Weight (calculated)

42126.9 Da

IEP (calculated)

4.635

GRAVY (calculated)

-0.300

Length

372 amino acids

Sequence
(BLAST)

001: MAQPQEQKTH QQPHNLPFLL DTLYCEENHW EEEVREEGFL EEEEEESYYS DGSKPNAPPL LEPDLLCEDE ELVSLFSKEE KNDLHSNPES NPLAAGARSE
101: AVEWMLRVNA HYSFSALTAV LAVNYFDRFL FSCDVQGEKP WMTQLAAVAC LSLAAKVEET QVPLLLDLQV EETMYVFEAK TIQRMEIMVL STLRWKMNPV
201: TPLSFLDYIT RRLGLKNHLC WEFLKRCERL LLSVLSDCRF GCYLPSVIAT AIMLHVIDSV EPCIRVQYQS QLLGILGIDK DKVEDCSQLI LDIASSARCH
301: HHNKRKFAST PGSPNGVMDG WFSCDSSNDS WAVAVSSSPS SSEHLSKKSR GQEQHLQTLN QATADAPTVI PR

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.