Factsheet for VIT_03s0180g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g00670.t01
VIT_06s0061g00810.t01
VIT_07s0031g00800.t01
VIT_15s0045g00310.t01
VIT_18s0122g00550.t01
VIT_19s0090g00280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34160.1	VIT_18s0122g00550.t01	AT1G76540.1	12857813
AT4G34160.1	VIT_06s0061g00810.t01	AT2G27970.1	17426018
AT4G34160.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT4G34160.1	VIT_03s0063g00670.t01	AT3G19150.1	17426018
AT4G34160.1	VIT_07s0031g00800.t01	AT3G19150.1	17426018
AT4G34160.1	VIT_03s0063g00670.t01	AT3G19150.1	20706207
AT4G34160.1	VIT_07s0031g00800.t01	AT3G19150.1	20706207
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	11096103
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	16517759
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	16766674
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	17426018
AT4G34160.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT4G34160.1	VIT_19s0090g00280.t01	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g01100.t01	Wine grape	nucleus	59.07	73.79
PGSC0003DMT400066557	Potato	nucleus	60.62	65.36
Solyc01g107730.2.1	Tomato	nucleus	61.4	65.11
KRG90996	Soybean	nucleus	63.47	62.34
VIT_18s0001g09920.t01	Wine grape	nucleus	58.81	61.02
KRH35760	Soybean	nucleus	62.69	60.2
Bra011501.1-P	Field mustard	nucleus	52.85	54.69
CDY69708	Canola	nucleus	52.85	54.55
CDX76265	Canola	nucleus	51.55	54.52
CDX72453	Canola	nucleus	50.78	54.44
CDX75405	Canola	nucleus	52.59	54.42
CDY57741	Canola	nucleus	51.3	54.25
Bra017629.1-P	Field mustard	nucleus	51.55	54.08
CDY49278	Canola	nucleus	51.55	53.93
Bra034612.1-P	Field mustard	nucleus	51.3	53.8
AT4G34160.1	Thale cress	nucleus	51.55	52.93
VIT_00s0194g00280.t01	Wine grape	mitochondrion	33.16	44.91
GSMUA_Achr1P09780_001	Banana	cytosol	38.08	37.89
GSMUA_Achr2P05260_001	Banana	nucleus	33.68	37.68
GSMUA_Achr3P13140_001	Banana	nucleus	37.56	35.63
TraesCS5B01G158400.1	Wheat	cytosol	32.64	35.59
GSMUA_Achr4P20220_001	Banana	nucleus	33.16	35.36
HORVU5Hr1G050270.8	Barley	cytosol	32.12	35.33
TraesCS5A01G161000.1	Wheat	cytosol	32.38	35.31
TraesCS5D01G165900.1	Wheat	cytosol	32.38	35.31
GSMUA_AchrUn_...	Banana	cytosol	28.76	35.02
VIT_18s0001g07220.t01	Wine grape	nucleus	31.35	34.08
GSMUA_Achr3P01010_001	Banana	nucleus	35.23	33.42
Os09t0111100-01	Rice	cytosol	30.31	32.14
VIT_01s0026g00710.t01	Wine grape	nucleus	26.42	31.48
Zm00001d019696_P001	Maize	cytosol	31.09	31.01
Zm00001d005293_P001	Maize	cytosol	31.35	30.95
EER96424	Sorghum	cytosol	30.31	30.63
VIT_00s0199g00210.t01	Wine grape	nucleus	27.72	30.31
VIT_03s0091g01060.t01	Wine grape	nucleus	27.46	29.94
VIT_00s0322g00010.t01	Wine grape	nucleus	23.06	29.18
VIT_18s0001g09160.t01	Wine grape	nucleus	22.8	27.76
VIT_12s0134g00500.t01	Wine grape	nucleus	20.73	27.21
VIT_07s0129g00200.t01	Wine grape	nucleus	21.5	25.15
VIT_08s0007g00790.t01	Wine grape	nucleus	20.98	23.96
VIT_00s0203g00160.t01	Wine grape	cytosol	16.84	20.57

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100264093	wikigene:100264093	MapMan:13.1.1.1.4	EMBL:AM445921	ProteinID:CAN60924
ProteinID:CAN60924.1	ProteinID:CCB62359	ProteinID:CCB62359.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	UniProt:F6I5Z1	EMBL:FN596754	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EntrezGene:LOC100264093	wikigene:LOC100264093	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF242	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
TIGR:TC57965	TMHMM:TMhelix	UniParc:UPI0001982E00	ArrayExpress:VIT_03s0180g00040	EnsemblPlantsGene:VIT_03s0180g00040	EnsemblPlants:VIT_03s0180g00040.t01
unigene:Vvi.9767	RefSeq:XP_002285320	RefSeq:XP_002285320.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:5973785..5975813

Molecular Weight (calculated)

44070.6 Da

IEP (calculated)

4.779

GRAVY (calculated)

-0.258

Length

386 amino acids

Sequence
(BLAST)

001: MAINQHHQQT PPQPPNSSSF LLDALYCEEE RWEEEEEDEC LQEEACEKYG NVDNDGIDPS STLLPLLLLE QDLFWEDEEL LSLFSKEEQQ ASLGAGNGEM
101: DGALAVARRQ AVEWMMKVNA HYGFSAVTAI LAINYLDRFL SSLHFQRDKP WMIQLAAVTC LSLAAKVEET QVPLLLDLQV EDSKYVFEAK TIQRMELLVL
201: STLQWKMNPV TPLSFIDHII RRLGLKTHLH WEFLRLCERF LLSVVADSRF VRYLPSVLAT ATMLHVINHV EPCNPIEYQN QLLGILKIDK DKVTECHQLI
301: VEVSNTHFYA QNNPHKRKYT KIPGSPNGVM DAYFSCDSSN DSWAVESSVS SSPVDPLFKK SRTQEQQMRL PSLNRVFVDV IGSSPR

Best Arabidopsis Sequence Match ( AT5G67260.1 )
(BLAST)

001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRMFL DVLSSPR

Arabidopsis Description

CYCD3;2CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.