Factsheet for VIT_18s0122g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00210.t01	cytosol, nucleus
VIT_01s0026g00710.t01
VIT_03s0017g00150.t01
VIT_03s0063g00670.t01	nucleus
VIT_03s0180g00040.t01
VIT_04s0008g04260.t01	nucleus
VIT_05s0020g01180.t01
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_06s0061g00810.t01	cytosol, cytosol, nucleus, nucleus
VIT_07s0005g03000.t01
VIT_07s0031g00800.t01	nucleus
VIT_07s0129g00200.t01	nucleus
VIT_07s0129g01100.t01
VIT_08s0040g00470.t01
VIT_08s0040g00930.t01	cytoskeleton, cytoskeleton, cytosol, cytosol, cytosol, cytosol
VIT_08s0040g01300.t01	cytosol, nucleus
VIT_08s0040g01330.t01	cytosol, nucleus
VIT_09s0002g05240.t01	nucleus, nucleus
VIT_09s0018g01930.t01
VIT_10s0092g00280.t01
VIT_11s0016g00830.t01
VIT_12s0134g00500.t01	nucleus
VIT_12s0142g00670.t01
VIT_13s0067g01420.t01	cytoskeleton, cytoskeleton, cytosol, cytosol, cytosol, cytosol
VIT_15s0045g00310.t01
VIT_17s0053g00580.t01
VIT_18s0001g02060.t01	nucleus
VIT_18s0001g09580.t01	nucleus
VIT_18s0001g14110.t01
VIT_18s0089g00420.t01
VIT_18s0122g00550.t01	cytosol, nucleus
VIT_19s0014g04520.t01
VIT_19s0085g00690.t01	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20930.1	VIT_19s0085g00690.t01	AT1G16330.1	20407024
AT1G20930.1	VIT_18s0001g14110.t01	AT1G47870.1	20407024
AT1G20930.1	VIT_09s0018g01930.t01	AT1G51650.1	20706207
AT1G20930.1	VIT_10s0092g00280.t01	AT1G51650.1	20706207
AT1G20930.1	VIT_18s0089g00420.t01	AT1G51650.1	20706207
AT1G20930.1	VIT_19s0014g04520.t01	AT1G51650.1	20706207
AT1G20930.1	VIT_11s0016g00830.t01	AT2G05830.1	20706207
AT1G20930.1	VIT_17s0053g00580.t01	AT2G05830.1	20706207
AT1G20930.1	VIT_06s0061g00810.t01	AT2G27960.1	20407024
AT1G20930.1	VIT_06s0061g00810.t01	AT2G27970.1	20407024
AT1G20930.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT1G20930.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT1G20930.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT1G20930.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT1G20930.1	VIT_03s0017g00150.t01	AT3G11270.1	20706207
AT1G20930.1	VIT_07s0005g03000.t01	AT3G11270.1	20706207
AT1G20930.1	VIT_12s0142g00670.t01	AT3G22310.1	20706207
AT1G20930.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT1G20930.1	VIT_08s0040g00930.t01	AT4G37490.1	20407024
AT1G20930.1	VIT_13s0067g01420.t01	AT4G37490.1	20407024
AT1G20930.1	VIT_08s0040g00930.t01	AT5G06150.1	20407024
AT1G20930.1	VIT_13s0067g01420.t01	AT5G06150.1	20407024
AT1G20930.1	VIT_08s0040g00930.t01	AT5G06150.1	20407024
AT1G20930.1	VIT_13s0067g01420.t01	AT5G06150.1	20407024
AT1G20930.1	VIT_04s0008g04260.t01	AT5G11300.1	20407024
AT1G20930.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT1G20930.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT1G76540.1	VIT_05s0020g01180.t01	AT1G09100.1	20706207
AT1G76540.1	VIT_09s0002g05240.t01	AT1G15570.1	20407024
AT1G76540.1	VIT_19s0085g00690.t01	AT1G16330.1	20407024
AT1G76540.1	VIT_18s0001g02060.t01	AT1G44110.1	20407024
AT1G76540.1	VIT_01s0026g00710.t01	AT1G70210.1	12857813
AT1G76540.1	VIT_18s0122g00550.t01	AT1G76540.1	20407024
AT1G76540.1	VIT_18s0122g00550.t01	AT1G76540.1	20407024
AT1G76540.1	VIT_09s0002g05240.t01	AT1G80370.1	20407024
AT1G76540.1	VIT_06s0061g00810.t01	AT2G27960.1	11432958
AT1G76540.1	VIT_06s0061g00810.t01	AT2G27960.1	12857813
AT1G76540.1	VIT_06s0061g00810.t01	AT2G27960.1	20407024
AT1G76540.1	VIT_06s0061g00810.t01	AT2G27960.1	20407024
AT1G76540.1	VIT_06s0061g00810.t01	AT2G27970.1	20407024
AT1G76540.1	VIT_06s0061g00810.t01	AT2G27970.1	20407024
AT1G76540.1	VIT_03s0063g00670.t01	AT3G19150.1	20407024
AT1G76540.1	VIT_07s0031g00800.t01	AT3G19150.1	20407024
AT1G76540.1	VIT_15s0045g00310.t01	AT3G48750.1	10420643
AT1G76540.1	VIT_12s0134g00500.t01	AT4G03270.1	20407024
AT1G76540.1	VIT_03s0180g00040.t01	AT4G34160.1	12857813
AT1G76540.1	VIT_07s0129g01100.t01	AT4G34160.1	12857813
AT1G76540.1	VIT_08s0040g00930.t01	AT4G37490.1	20407024
AT1G76540.1	VIT_13s0067g01420.t01	AT4G37490.1	20407024
AT1G76540.1	VIT_07s0129g00200.t01	AT4G37630.1	20407024
AT1G76540.1	VIT_08s0040g01300.t01	AT5G03415.1	20407024
AT1G76540.1	VIT_08s0040g01330.t01	AT5G03415.1	20407024
AT1G76540.1	VIT_08s0040g01300.t01	AT5G03415.1	20407024
AT1G76540.1	VIT_08s0040g01330.t01	AT5G03415.1	20407024
AT1G76540.1	VIT_08s0040g00930.t01	AT5G06150.1	20407024
AT1G76540.1	VIT_13s0067g01420.t01	AT5G06150.1	20407024
AT1G76540.1	VIT_08s0040g00930.t01	AT5G06150.1	20407024
AT1G76540.1	VIT_13s0067g01420.t01	AT5G06150.1	20407024
AT1G76540.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024
AT1G76540.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024
AT1G76540.1	VIT_04s0008g04260.t01	AT5G11300.1	12857813
AT1G76540.1	VIT_04s0008g04260.t01	AT5G11300.1	20407024
AT1G76540.1	VIT_18s0001g09580.t01	AT5G43080.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06014	Soybean	cytosol	83.28	85.67
KRH37522	Soybean	cytosol	82.97	84.54
GSMUA_Achr3P03700_001	Banana	cytosol	78.64	84.11
AT1G76540.1	Thale cress	cytosol	81.11	83.71
AT1G20930.1	Thale cress	cytosol	81.11	83.17
Solyc04g082840.2.1	Tomato	cytosol	81.11	83.17
PGSC0003DMT400025910	Potato	cytosol	81.11	83.17
KRH48128	Soybean	cytosol	81.11	83.17
CDY01345	Canola	cytosol	80.81	82.59
CDY31856	Canola	cytosol	80.81	82.59
Bra012258.1-P	Field mustard	cytosol	80.81	82.59
Bra015735.1-P	Field mustard	cytosol	79.88	82.43
CDX87588	Canola	cytosol	79.57	82.11
CDX88294	Canola	cytosol	78.95	81.47
KRH17547	Soybean	cytosol	83.9	80.42
GSMUA_Achr9P12350_001	Banana	cytosol	78.02	78.26
TraesCS7D01G247700.1	Wheat	cytosol	76.47	75.77
TraesCS7B01G142600.1	Wheat	cytosol	76.47	75.77
TraesCS7A01G248700.1	Wheat	cytosol	76.47	75.77
GSMUA_Achr11P...	Banana	cytosol	78.02	75.45
Zm00001d046912_P001	Maize	cytosol, mitochondrion, peroxisome	74.92	74.46
EER90152	Sorghum	cytosol, mitochondrion, peroxisome	74.3	73.85
Os08t0512600-01	Rice	cytosol, plasma membrane	73.99	73.31
Zm00001d031485_P001	Maize	mitochondrion	74.3	72.95
VIT_08s0056g00210.t01	Wine grape	cytosol	64.71	68.98
HORVU7Hr1G051180.3	Barley	cytosol	69.97	67.66
VIT_15s0045g00310.t01	Wine grape	cytosol	52.01	57.14
OQU80908	Sorghum	mitochondrion	73.99	56.64
VIT_14s0006g02280.t01	Wine grape	cytosol	38.7	36.02
VIT_17s0000g02960.t01	Wine grape	cytosol	40.25	30.81
VIT_09s0070g00320.t01	Wine grape	cytosol	21.98	27.1
VIT_07s0031g02680.t01	Wine grape	cytosol	40.25	27.03
VIT_17s0000g01810.t01	Wine grape	nucleus	41.49	25.14
VIT_02s0033g01110.t01	Wine grape	cytosol	33.13	23.67
VIT_07s0151g00350.t01	Wine grape	mitochondrion	33.75	23.24
VIT_01s0010g02550.t01	Wine grape	nucleus	41.49	17.77

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100254782	wikigene:100254782	MapMan:13.1.1.2.2	MapMan:18.4.3.1.2	Gene3D:3.30.200.20
ProteinID:CCB62681	ProteinID:CCB62681.1	UniProt:F6I6W3	EMBL:FN596759	GO:GO:0000082	GO:GO:0000166
GO:GO:0000307	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004693
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008284	GO:GO:0009987
GO:GO:0010033	GO:GO:0010389	GO:GO:0010468	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019538	GO:GO:0030332	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100254782	wikigene:LOC100254782
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF178
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC52136
UniParc:UPI00019851D2	ArrayExpress:VIT_18s0122g00550	EnsemblPlantsGene:VIT_18s0122g00550	EnsemblPlants:VIT_18s0122g00550.t01	unigene:Vvi.14506	RefSeq:XP_002276150
RefSeq:XP_002276150.1	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:444081..446439

Molecular Weight (calculated)

37114.1 Da

IEP (calculated)

8.696

GRAVY (calculated)

-0.434

Length

323 amino acids

Sequence
(BLAST)

001: MERIENQKSA MEAFEKLEKV GEGTYGKVYR ARERATGKIV ALKKTRLHED DEGVPPTTLR EVSLLRMLSR DPHVVRLMDV KQSLNKEGKT VLYLVFEYMD
101: TDLKKYIRSF RQTGENIPTK TIKSLMYQLC KGVAFCHGHG VLHRDLKPHN LLMDRKTMML KIADLGLARA FTLPIKKYTH EILTLWYRAP EVLLGSTHYS
201: TAVDMWSVGC IFAELITKQA LFPGDSELQQ LLHIFKLLGT PNEEMWPGVT KLPNWHEFPQ WSPNQNPKNS SSAFPNLSAA VPNLDEDGLD LLSKMLKYDP
301: SERISAKKAM EHPYFDDLDK DYL

Best Arabidopsis Sequence Match ( AT1G76540.1 )
(BLAST)

001: MDEGVIAVSA MDAFEKLEKV GEGTYGKVYR AREKATGKIV ALKKTRLHED EEGVPSTTLR EISILRMLAR DPHVVRLMDV KQGLSKEGKT VLYLVFEYMD
101: TDVKKFIRSF RSTGKNIPTQ TIKSLMYQLC KGMAFCHGHG ILHRDLKPHN LLMDPKTMRL KIADLGLARA FTLPMKKYTH EILTLWYRAP EVLLGATHYS
201: TAVDMWSVGC IFAELVTNQA IFQGDSELQQ LLHIFKLFGT PNEEMWPGVS TLKNWHEYPQ WKPSTLSSAV PNLDEAGVDL LSKMLQYEPA KRISAKMAME
301: HPYFDDLPEK SSL

Arabidopsis Description

CDKB2-1CDKB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.