Factsheet for VIT_17s0000g02960.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41782	Soybean	cytosol, nucleus	73.22	85.12
KRH39114	Soybean	nucleus	81.52	83.7
KRH60482	Soybean	cytosol	81.04	83.62
KRH48600	Soybean	cytosol	79.15	83.29
Solyc08g081280.2.1	Tomato	cytosol, nucleus	80.57	81.15
PGSC0003DMT400032131	Potato	cytosol	80.33	80.91
VIT_14s0006g02280.t01	Wine grape	cytosol	66.11	80.4
TraesCS1A01G245600.1	Wheat	cytosol	76.07	75.71
TraesCS1D01G245300.1	Wheat	cytosol	76.07	75.71
TraesCS1B01G256600.1	Wheat	cytosol	75.83	75.47
HORVU1Hr1G062980.2	Barley	cytosol	75.36	74.82
Zm00001d010476_P001	Maize	cytosol	72.04	71.03
EES18176	Sorghum	cytosol	71.8	70.79
GSMUA_Achr3P09020_001	Banana	cytosol	77.96	69.7
Zm00001d038109_P002	Maize	cytosol	69.67	68.37
GSMUA_Achr9P17590_001	Banana	cytosol	77.49	65.27
VIT_15s0045g00310.t01	Wine grape	cytosol	33.18	47.62
VIT_08s0056g00210.t01	Wine grape	cytosol	31.28	43.56
VIT_18s0122g00550.t01	Wine grape	cytosol	30.81	40.25
VIT_07s0031g02680.t01	Wine grape	cytosol	33.89	29.73
VIT_09s0070g00320.t01	Wine grape	cytosol	17.77	28.63
VIT_02s0033g01110.t01	Wine grape	cytosol	28.44	26.55
VIT_07s0151g00350.t01	Wine grape	mitochondrion	27.96	25.16
VIT_17s0000g01810.t01	Wine grape	nucleus	30.81	24.39
VIT_01s0010g02550.t01	Wine grape	nucleus	32.23	18.04

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100247566	wikigene:100247566	MapMan:13.1.1.2.4	MapMan:14.6.3.1.3	MapMan:15.3.5.6.2.2
MapMan:18.4.3.1.4	Gene3D:3.30.200.20	EMBL:AM440368	ProteinID:CAN60748	ProteinID:CAN60748.1	ProteinID:CBI15522
ProteinID:CBI15522.3	UniProt:D7SJ61	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0006139
GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0045944	GO:GO:0051726
GO:GO:0070985	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100247566	wikigene:LOC100247566	PFAM:PF00069
PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF242
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC64893
UniParc:UPI00015C950F	ArrayExpress:VIT_17s0000g02960	EnsemblPlantsGene:VIT_17s0000g02960	EnsemblPlants:VIT_17s0000g02960.t01	unigene:Vvi.12178	RefSeq:XP_002280613
RefSeq:XP_002280613.1	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:2724717..2743382

Molecular Weight (calculated)

48172.1 Da

IEP (calculated)

9.809

GRAVY (calculated)

-0.470

Length

422 amino acids

Sequence
(BLAST)

001: MSEVPNVFSK KVADRYLKRE VLGEGTYGVV SKAIDTKTGQ IVAIKKIRLG KHKEGVNFTA LREIKLLKEL KDPHIIELID AFPHKGNLHL VFEFMETDLE
101: AVIRDRNIVL SLADIKSFLQ MTLKGLAFCH KKWVLHRDMK PNNLLIGDKG QLKLADFGLA RIFGSPDRKF THQVFARWYR APELLFGSKQ YGPGVDVWAA
201: ACIFAELLLR RPFLQGSSDI DQLGKIFAAF GTPKPAQWPD MVYLPDYVEY QFVPAPPLRS LFPMASDDAL DLLSKMFTYD PKTRISVQQA LEHRYFTSGP
301: LPTEPAKLPR PHPKRESLNT RVSDFNQQEG PTVLSPPRKS RRVMPQRDGF EENAHQVEKS DEHVNDIRQA TGERMSWNEH APMSIDFSVF GSRPPPRPTI
401: NSADKSRLKR KLDLEFQQPD QD

Best Arabidopsis Sequence Match ( AT1G18040.1 )
(BLAST)

001: MPEQPKKVAD RYLKQEVLGQ GTYGVVFKAT DTKTEQTVAI KKIRLGKQRE GVNITALREI KMLKELKHPH IILLIDAFPH KENLHLVFEF METDLEAVIR
101: DSNIFLSPAD IKSYLLMTFK GLAYCHDKWV LHRDMKPNNL LIGVDGQLKL ADFGLARIFG SPNRKFTHQV FARWYRAPEL LFGAKQYGAA VDVWAVACIF
201: AELLLRRPFL QGNSDIDQLS KIFAAFGTPK ADQWPDLTKL PDYVEYQFVP APSLRSLFPA VSDDALDLLS KMFTYDPKAR ISIKQALEHR YFTSAPAPTD
301: PAKLPKPVPK QDGKSSYGKH EAITVQSPPR KLRRVMPERG RVDSLKSHVD KDQQAPMSLD FTILAERPPN RPTITSADRS HLKRKLDLEF Q

Arabidopsis Description

CDKD-3Cyclin-dependent kinase D-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.