Factsheet for VIT_08s0056g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00210.t01	cytosol, nucleus
VIT_01s0010g02550.t01	nucleus
VIT_01s0026g00710.t01	endoplasmic reticulum
VIT_02s0025g02010.t01
VIT_03s0063g00670.t01	cytosol, nucleus
VIT_04s0008g02780.t01
VIT_04s0008g04260.t01	nucleus
VIT_05s0029g00040.t01	nucleus
VIT_06s0061g00270.t01
VIT_06s0061g00810.t01	cytosol, cytosol, nucleus, nucleus
VIT_07s0005g06340.t01	nucleus
VIT_07s0031g00800.t01	cytosol, nucleus
VIT_07s0031g02680.t01	nucleus
VIT_07s0129g00200.t01	nucleus
VIT_08s0040g00930.t01	cytoskeleton, cytosol
VIT_08s0056g00210.t01	cytosol, nucleus
VIT_09s0002g05240.t01	nucleus, nucleus
VIT_12s0134g00500.t01	nucleus
VIT_13s0067g01420.t01	cytoskeleton, cytosol
VIT_14s0006g02280.t01	cytosol, nucleus, nucleus
VIT_18s0001g02060.t01	cytoskeleton, cytosol, nucleus
VIT_18s0001g09580.t01	nucleus
VIT_18s0001g14170.t01	endoplasmic reticulum
VIT_18s0122g00550.t01	cytosol, cytosol, nucleus, nucleus
VIT_19s0085g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54180.1	VIT_09s0002g05240.t01	AT1G15570.1	20407024
AT3G54180.1	VIT_19s0085g00690.t01	AT1G16330.1	20407024
AT3G54180.1	VIT_19s0085g00690.t01	AT1G16330.1	20706207
AT3G54180.1	VIT_14s0006g02280.t01	AT1G18040.1	20407024
AT3G54180.1	VIT_18s0001g14170.t01	AT1G20610.1	20407024
AT3G54180.1	VIT_18s0122g00550.t01	AT1G20930.1	20407024
AT3G54180.1	VIT_18s0122g00550.t01	AT1G20930.1	20407024
AT3G54180.1	VIT_18s0001g02060.t01	AT1G44110.1	20407024
AT3G54180.1	VIT_18s0001g02060.t01	AT1G44110.1	20407024
AT3G54180.1	VIT_18s0001g02060.t01	AT1G44110.1	20407024
AT3G54180.1	VIT_02s0025g02010.t01	AT1G64520.1	17426018
AT3G54180.1	VIT_14s0006g02280.t01	AT1G66750.1	20407024
AT3G54180.1	VIT_14s0006g02280.t01	AT1G66750.1	20407024
AT3G54180.1	VIT_01s0010g02550.t01	AT1G67580.1	20407024
AT3G54180.1	VIT_01s0026g00710.t01	AT1G70210.1	12857813
AT3G54180.1	VIT_01s0026g00710.t01	AT1G70210.1	20407024
AT3G54180.1	VIT_18s0122g00550.t01	AT1G76540.1	20407024
AT3G54180.1	VIT_18s0122g00550.t01	AT1G76540.1	20407024
AT3G54180.1	VIT_09s0002g05240.t01	AT1G80370.1	20407024
AT3G54180.1	VIT_06s0061g00810.t01	AT2G27960.1	11432958
AT3G54180.1	VIT_06s0061g00810.t01	AT2G27960.1	11449057
AT3G54180.1	VIT_06s0061g00810.t01	AT2G27960.1	20407024
AT3G54180.1	VIT_06s0061g00810.t01	AT2G27960.1	20407024
AT3G54180.1	VIT_06s0061g00810.t01	AT2G27960.1	9276444
AT3G54180.1	VIT_06s0061g00810.t01	AT2G27970.1	17426018
AT3G54180.1	VIT_06s0061g00810.t01	AT2G27970.1	20407024
AT3G54180.1	VIT_06s0061g00810.t01	AT2G27970.1	20407024
AT3G54180.1	VIT_06s0061g00270.t01	AT2G28000.1	17426018
AT3G54180.1	VIT_05s0029g00040.t01	AT2G32710.1	20407024
AT3G54180.1	VIT_04s0008g02780.t01	AT3G12280.1	20706207
AT3G54180.1	VIT_03s0063g00670.t01	AT3G19150.1	20407024
AT3G54180.1	VIT_07s0031g00800.t01	AT3G19150.1	20407024
AT3G54180.1	VIT_03s0063g00670.t01	AT3G19150.1	20407024
AT3G54180.1	VIT_07s0031g00800.t01	AT3G19150.1	20407024
AT3G54180.1	VIT_07s0005g06340.t01	AT3G24810.1	10758489
AT3G54180.1	VIT_07s0005g06340.t01	AT3G24810.1	20407024
AT3G54180.1	VIT_08s0056g00210.t01	AT3G54180.1	20407024
AT3G54180.1	VIT_08s0056g00210.t01	AT3G54180.1	20407024
AT3G54180.1	VIT_12s0134g00500.t01	AT4G03270.1	20407024
AT3G54180.1	VIT_08s0040g00930.t01	AT4G37490.1	12065421
AT3G54180.1	VIT_13s0067g01420.t01	AT4G37490.1	12065421
AT3G54180.1	VIT_07s0129g00200.t01	AT4G37630.1	20407024
AT3G54180.1	VIT_08s0040g00930.t01	AT5G06150.1	20407024
AT3G54180.1	VIT_13s0067g01420.t01	AT5G06150.1	20407024
AT3G54180.1	VIT_08s0040g00930.t01	AT5G06150.1	20407024
AT3G54180.1	VIT_13s0067g01420.t01	AT5G06150.1	20407024
AT3G54180.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024
AT3G54180.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024
AT3G54180.1	VIT_04s0008g04260.t01	AT5G11300.1	20407024
AT3G54180.1	VIT_18s0001g09580.t01	AT5G43080.1	20407024
AT3G54180.1	VIT_07s0031g02680.t01	AT5G63610.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g074720.1.1	Tomato	cytosol, nucleus	91.75	91.75
PGSC0003DMT400071215	Potato	cytosol	91.42	91.42
KRH47306	Soybean	cytosol, nucleus, plasma membrane	89.11	85.99
GSMUA_Achr11P...	Banana	cytosol	85.15	85.15
AT3G54180.1	Thale cress	cytosol	85.81	84.14
Bra014835.1-P	Field mustard	cytosol	83.83	83.55
CDX76164	Canola	cytosol	83.83	83.55
CDY07716	Canola	cytosol	85.15	83.5
Os01t0897000-01	Rice	cytosol	83.17	83.17
CDY13189	Canola	cytosol	83.17	82.89
Bra000077.1-P	Field mustard	cytosol, nucleus, plasma membrane	85.15	82.69
CDY62439	Canola	cytosol, nucleus, plasma membrane	84.49	82.58
AT2G38620.2	Thale cress	cytosol	84.49	82.32
EES15619	Sorghum	cytosol	81.85	80.52
TraesCS5B01G144100.2	Wheat	cytosol	79.87	79.61
TraesCS5D01G147100.1	Wheat	cytosol	79.54	79.28
TraesCS5A01G145500.1	Wheat	cytosol	78.88	78.62
TraesCS4B01G123100.1	Wheat	cytosol	78.88	77.35
TraesCS4D01G121200.2	Wheat	cytosol	78.88	77.35
TraesCS4A01G192300.1	Wheat	cytosol	78.22	76.7
GSMUA_Achr4P02420_001	Banana	cytosol	58.42	73.44
Zm00001d044672_P005	Maize	cytosol	80.2	73.41
HORVU5Hr1G046190.1	Barley	plastid	80.53	65.42
VIT_18s0122g00550.t01	Wine grape	cytosol	68.98	64.71
HORVU4Hr1G023490.7	Barley	endoplasmic reticulum, vacuole	78.55	62.8
VIT_15s0045g00310.t01	Wine grape	cytosol	57.1	58.84
VIT_14s0006g02280.t01	Wine grape	cytosol	42.9	37.46
VIT_17s0000g02960.t01	Wine grape	cytosol	43.56	31.28
VIT_07s0031g02680.t01	Wine grape	cytosol	44.55	28.07
VIT_09s0070g00320.t01	Wine grape	cytosol	23.43	27.1
VIT_02s0033g01110.t01	Wine grape	cytosol	36.3	24.34
VIT_17s0000g01810.t01	Wine grape	nucleus	42.57	24.2
VIT_07s0151g00350.t01	Wine grape	mitochondrion	33.33	21.54
VIT_01s0010g02550.t01	Wine grape	nucleus	42.9	17.24

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100262151	wikigene:100262151	MapMan:13.1.1.2.2	MapMan:18.4.3.1.2	Gene3D:3.30.200.20
UniProt:C5DB66	ProteinID:CAQ58627	ProteinID:CAQ58627.1	ProteinID:CCB55937	ProteinID:CCB55937.1	EMBL:CU914151
EMBL:FN595995	GO:GO:0000082	GO:GO:0000166	GO:GO:0000307	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004693	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008284	GO:GO:0009987	GO:GO:0010033	GO:GO:0010389	GO:GO:0010468
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0030332	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100262151	wikigene:LOC100262151	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF11	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00015CC427	ArrayExpress:VIT_08s0056g00210	EnsemblPlantsGene:VIT_08s0056g00210	EnsemblPlants:VIT_08s0056g00210.t01
unigene:Vvi.17535	RefSeq:XP_002266623	RefSeq:XP_002266623.1	SEG:seg	:	:

Description

Kinase cdc2 homolog B [Source:UniProtKB/TrEMBL;Acc:C5DB66]

Coordinates

chr8:+:334941..338670

Molecular Weight (calculated)

34493.8 Da

IEP (calculated)

8.553

GRAVY (calculated)

-0.313

Length

303 amino acids

Sequence
(BLAST)

001: MDKYEKLEKV GEGTYGKVYK AKDKTSGQVV ALKKTRLEMD EEGVPPTALR EVSLLQMLSQ SLYVVRLLCV EHLDKNGKPF LYLVFEYLDT DLKKFIDSHR
101: KPPNPRPMPP ALIQSFLYQL CKGVAHCHSH GVLHRDLKPQ NLLVDKDKGI LKIADLGLGR AFTVPLKSYT HEIVTLWYRA PEVLLGSTHY STGVDMWSVG
201: CIFAEMVRRQ ALFPGDSEFQ QLLHIFRLLG TPTEKQWPGV SSLRDWHVYP QWEPQNLARA VPSLGPDGVD LLSKMLKYDP SERISAKAAL DHPYFDSLDK
301: SQF

Best Arabidopsis Sequence Match ( AT2G38620.2 )
(BLAST)

001: MEKYEKLEKV GEGTYGKVYK AMEKTTGKLV ALKKTRLEMD EEGIPPTALR EISLLQMLSQ SIYIVRLLCV EHVIQSKDST VSHSPKSNLY LVFEYLDTDL
101: KKFIDSHRKG SNPRPLEASL VQRFMFQLFK GVAHCHSHGV LHRDLKPQNL LLDKDKGILK IADLGLSRAF TVPLKAYTHE IVTLWYRAPE VLLGSTHYST
201: AVDIWSVGCI FAEMIRRQAL FPGDSEFQQL LHIFRLLGTP TEQQWPGVMA LRDWHVYPKW EPQDLSRAVP SLSPEGIDLL TQMLKYNPAE RISAKAALDH
301: PYFDSLDKSQ F

Arabidopsis Description

CDKB1-2Cyclin-dependent kinase B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q2V419]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.