Factsheet for VIT_06s0061g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00210.t01	nucleus, nucleus
VIT_03s0063g00670.t01	nucleus, nucleus
VIT_04s0008g03010.t01
VIT_05s0029g00040.t01	nucleus, nucleus, nucleus, nucleus
VIT_05s0124g00240.t01
VIT_07s0005g02190.t01
VIT_07s0005g06340.t01	nucleus
VIT_07s0031g00800.t01	nucleus, nucleus
VIT_07s0129g00200.t01	nucleus, nucleus
VIT_08s0007g01030.t01
VIT_08s0007g01040.t01
VIT_08s0007g05710.t01
VIT_08s0056g00210.t01
VIT_12s0134g00500.t01	nucleus, nucleus
VIT_12s0142g00670.t01
VIT_13s0019g01840.t01	endoplasmic reticulum, endoplasmic reticulum
VIT_13s0019g02360.t01
VIT_13s0320g00010.t01
VIT_14s0060g01230.t01
VIT_14s0068g02140.t01
VIT_15s0045g00310.t01
VIT_18s0089g00210.t01
VIT_18s0122g00550.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27960.1	VIT_18s0122g00550.t01	AT1G20930.1	17426018
AT2G27960.1	VIT_18s0122g00550.t01	AT1G20930.1	20706207
AT2G27960.1	VIT_18s0122g00550.t01	AT1G76540.1	11432958
AT2G27960.1	VIT_18s0122g00550.t01	AT1G76540.1	12857813
AT2G27960.1	VIT_18s0122g00550.t01	AT1G76540.1	17426018
AT2G27960.1	VIT_18s0122g00550.t01	AT1G76540.1	20706207
AT2G27960.1	VIT_18s0122g00550.t01	AT1G76540.1	21798944
AT2G27960.1	VIT_13s0320g00010.t01	AT2G31920.1	20706207
AT2G27960.1	VIT_05s0029g00040.t01	AT2G32710.1	20018602
AT2G27960.1	VIT_05s0029g00040.t01	AT2G32710.1	20407024
AT2G27960.1	VIT_13s0019g02360.t01	AT2G39800.1	20706207
AT2G27960.1	VIT_03s0063g00670.t01	AT3G19150.1	20407024
AT2G27960.1	VIT_07s0031g00800.t01	AT3G19150.1	20407024
AT2G27960.1	VIT_03s0063g00670.t01	AT3G19150.1	20706207
AT2G27960.1	VIT_07s0031g00800.t01	AT3G19150.1	20706207
AT2G27960.1	VIT_15s0045g00310.t01	AT3G48750.1	11432958
AT2G27960.1	VIT_15s0045g00310.t01	AT3G48750.1	11449057
AT2G27960.1	VIT_15s0045g00310.t01	AT3G48750.1	17426018
AT2G27960.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT2G27960.1	VIT_15s0045g00310.t01	AT3G48750.1	9276444
AT2G27960.1	VIT_08s0007g01030.t01	AT3G53880.1	17426018
AT2G27960.1	VIT_08s0007g01040.t01	AT3G53880.1	17426018
AT2G27960.1	VIT_08s0007g01030.t01	AT3G53880.1	20706207
AT2G27960.1	VIT_08s0007g01040.t01	AT3G53880.1	20706207
AT2G27960.1	VIT_08s0056g00210.t01	AT3G54180.1	11432958
AT2G27960.1	VIT_08s0056g00210.t01	AT3G54180.1	11449057
AT2G27960.1	VIT_08s0056g00210.t01	AT3G54180.1	17426018
AT2G27960.1	VIT_08s0056g00210.t01	AT3G54180.1	20706207
AT2G27960.1	VIT_08s0056g00210.t01	AT3G54180.1	9276444
AT2G27960.1	VIT_13s0019g02360.t01	AT3G55610.1	20706207
AT2G27960.1	VIT_07s0005g02190.t01	AT3G62240.1	20706207
AT2G27960.1	VIT_12s0134g00500.t01	AT4G03270.1	20407024
AT2G27960.1	VIT_04s0008g03010.t01	AT4G26870.1	20706207
AT2G27960.1	VIT_07s0129g00200.t01	AT4G37630.1	20407024
AT2G27960.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024
AT2G27960.1	VIT_13s0019g01840.t01	AT5G13840.1	20407024
AT2G27960.1	VIT_14s0060g01230.t01	AT5G26860.1	20706207
AT2G27970.1	VIT_05s0124g00240.t01	AT1G05805.1	20706207
AT2G27970.1	VIT_18s0089g00210.t01	AT1G71380.1	20706207
AT2G27970.1	VIT_18s0122g00550.t01	AT1G76540.1	20706207
AT2G27970.1	VIT_05s0029g00040.t01	AT2G32710.1	20018602
AT2G27970.1	VIT_05s0029g00040.t01	AT2G32710.1	20407024
AT2G27970.1	VIT_03s0063g00670.t01	AT3G19150.1	20407024
AT2G27970.1	VIT_07s0031g00800.t01	AT3G19150.1	20407024
AT2G27970.1	VIT_12s0142g00670.t01	AT3G22310.1	20706207
AT2G27970.1	VIT_07s0005g06340.t01	AT3G24810.1	20407024
AT2G27970.1	VIT_08s0007g05710.t01	AT3G47930.1	20706207
AT2G27970.1	VIT_08s0056g00210.t01	AT3G54180.1	20706207
AT2G27970.1	VIT_12s0134g00500.t01	AT4G03270.1	20407024
AT2G27970.1	VIT_07s0129g00200.t01	AT4G37630.1	20407024
AT2G27970.1	VIT_00s0199g00210.t01	AT5G10440.1	20407024
AT2G27970.1	VIT_13s0019g01840.t01	AT5G13840.1	20407024
AT2G27970.1	VIT_14s0068g02140.t01	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048460	Potato	cytosol	95.45	95.45
PGSC0003DMT400001218	Potato	cytosol	95.45	95.45
KRH30550	Soybean	cytosol	95.45	95.45
KRH25124	Soybean	cytosol	95.45	95.45
AT2G27960.1	Thale cress	cytosol	92.05	93.1
KXG40187	Sorghum	nucleus	88.64	89.66
Zm00001d048394_P001	Maize	nucleus	88.64	89.66
GSMUA_Achr2P11710_001	Banana	nucleus	90.91	86.02
Os03t0146300-01	Rice	nucleus	87.5	85.56
AT2G27970.1	Thale cress	nucleus	80.68	85.54
TraesCS4A01G410900.1	Wheat	nucleus	82.95	81.11
TraesCS4B01G311000.1	Wheat	nucleus	82.95	81.11
TraesCS4D01G308900.1	Wheat	nucleus	82.95	81.11
CDY30517	Canola	cytosol	73.86	80.25
CDX77145	Canola	cytosol	73.86	80.25
Bra034380.1-P	Field mustard	cytosol	73.86	80.25
Zm00001d027655_P001	Maize	cytosol	80.68	68.27
GSMUA_Achr2P11750_001	Banana	cytosol	90.91	60.15
HORVU4Hr1G079310.1	Barley	cytosol, mitochondrion, nucleus, plastid	84.09	55.22
Zm00001d015611_P002	Maize	plastid	72.73	35.75

Protein Annotations

EntrezGene:100261930	wikigene:100261930	MapMan:13.1.1.2.8	Gene3D:3.30.170.10	UniProt:A5AEC1	EMBL:AM424432
ProteinID:CAN60128	ProteinID:CAN60128.1	ProteinID:CBI17125	ProteinID:CBI17125.3	InterPro:Cyclin-dep_kinase_reg-sub	InterPro:Cyclin-dep_kinase_reg-sub_sf
EMBL:FN594957	GO:GO:0000307	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0007346
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019005
GO:GO:0019538	GO:GO:0019901	GO:GO:0030234	GO:GO:0042393	GO:GO:0043130	GO:GO:0045737
GO:GO:0045893	GO:GO:0051301	GO:GO:0061575	InterPro:IPR036858	EntrezGene:LOC100261930	wikigene:LOC100261930
PFAM:PF01111	PRINTS:PR00296	ScanProsite:PS00944	PANTHER:PTHR23415	PANTHER:PTHR23415:SF29	SMART:SM01084
SUPFAM:SSF55637	TIGR:TC63035	UniParc:UPI000151E688	ArrayExpress:VIT_06s0061g00810	EnsemblPlantsGene:VIT_06s0061g00810	EnsemblPlants:VIT_06s0061g00810.t01
RefSeq:XP_002274037	RefSeq:XP_002274037.1	SEG:seg	:	:	:

Description

Cyclin-dependent kinases regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A5AEC1]

Coordinates

chr6:-:18333330..18334782

Molecular Weight (calculated)

10607.7 Da

IEP (calculated)

9.394

GRAVY (calculated)

-0.887

Length

88 amino acids

Sequence
(BLAST)

1: MGQIQYSEKY FDDTYEYRHV VLPPEVAKLL QKNRLLSENE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQQQENQ AQQGLLAK

Best Arabidopsis Sequence Match ( AT2G27970.1 )
(BLAST)

1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK

Arabidopsis Description

CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.