Factsheet for VIT_13s0019g02360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05030.t01
VIT_09s0002g05940.t01
VIT_13s0019g02360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39800.1	VIT_13s0019g02360.t01	AT2G39800.1	21798944
AT2G39800.1	VIT_04s0008g05030.t01	AT5G20010.1	21798944
AT2G39800.1	VIT_09s0002g05940.t01	AT5G20010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15055	Soybean	nucleus	80.61	81.07
KRH73083	Soybean	endoplasmic reticulum	79.92	80.36
Solyc08g043170.2.1	Tomato	plastid	80.06	79.72
KRG97830	Soybean	endoplasmic reticulum	79.36	79.58
GSMUA_Achr8P02490_001	Banana	cytosol	79.64	79.31
VIT_08s0007g01060.t01	Wine grape	cytosol	78.66	78.99
Solyc06g019170.2.1	Tomato	nucleus, plastid, unclear	78.8	78.8
PGSC0003DMT400068829	Potato	cytosol	78.52	78.52
Os05t0455500-02	Rice	plasma membrane	78.1	78.21
PGSC0003DMT400068827	Potato	cytosol	68.48	77.69
KXG22139	Sorghum	cytosol	76.71	76.82
TraesCS1B01G290600.2	Wheat	mitochondrion	76.71	76.82
CDX76082	Canola	cytosol	76.71	76.82
TraesCS1A01G281400.1	Wheat	cytosol	76.29	76.4
HORVU1Hr1G072780.1	Barley	cytosol	76.29	76.4
Bra014732.1-P	Field mustard	cytosol	76.57	76.36
CDY40241	Canola	cytosol	77.41	76.34
Bra007179.1-P	Field mustard	cytosol	77.41	76.34
CDY20482	Canola	cytosol	76.29	76.29
CDX74830	Canola	cytosol	76.29	76.29
Bra005012.1-P	Field mustard	cytosol	76.29	76.29
CDY41203	Canola	cytosol	77.27	76.2
TraesCS1D01G280700.2	Wheat	golgi	76.01	76.12
CDY07635	Canola	cytosol	75.73	75.94
Bra000150.1-P	Field mustard	cytosol	75.73	75.94
AT2G39800.1	Thale cress	cytosol	75.87	75.87
CDX93233	Canola	cytosol	75.87	75.87
CDY65768	Canola	cytosol	76.71	75.76
CDY07034	Canola	cytosol	75.73	75.73
CDY61781	Canola	cytosol	75.45	75.66
Bra017051.1-P	Field mustard	cytosol	75.31	75.31
AT3G55610.1	Thale cress	cytosol	76.15	75.21
GSMUA_Achr10P...	Banana	cytosol	12.55	75.0
Os01t0848200-02	Rice	plasma membrane	74.9	73.06
Zm00001d038358_P002	Maize	cytosol	74.2	72.98
KXG33696	Sorghum	cytosol	73.5	72.29
TraesCS3B01G395900.1	Wheat	cytosol	73.5	72.19
TraesCS3D01G357200.1	Wheat	cytosol	73.5	72.19
Zm00001d010056_P002	Maize	cytosol	76.99	71.88
TraesCS3A01G363700.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	72.38	67.93
VIT_15s0024g00720.t01	Wine grape	cytosol	23.01	65.48
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	26.64	64.09
HORVU3Hr1G085760.5	Barley	cytosol, plastid	73.78	64.04
Zm00001d012391_P003	Maize	cytosol, peroxisome, plasma membrane	66.81	63.44

Protein Annotations

KEGG:00330+1.2.1.41	KEGG:00330+2.7.2.11	KEGG:00330+2.7.2.11+1.2.1.41	KEGG:00332+1.2.1.41	KEGG:00332+2.7.2.11	KEGG:00332+2.7.2.11+1.2.1.41
EntrezGene:100232881	wikigene:100232881	Gene3D:3.40.1160.10	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.1.1.1.4.1.1
EMBL:AJ005686	InterPro:AceGlu_kinase-like_sf	InterPro:Ald_DH/histidinol_DH	InterPro:Ald_DH_C	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom
InterPro:Asp/Glu/Uridylate_kinase	ProteinID:CAB40834	ProteinID:CAB40834.1	ProteinID:CCB56306	ProteinID:CCB56306.1	UniProt:F6HNT7
EMBL:FN595998	InterPro:G-glutamylP_reductase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004349
GO:GO:0004350	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006561	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016491	GO:GO:0016620	GO:GO:0016740
GO:GO:0055114	GO:GO:0055129	InterPro:GPR_dom	InterPro:Glu/AcGlu_kinase	InterPro:Glu_5kinase/COase_Synthase	InterPro:IPR016162
InterPro:IPR016163	InterPro:IPR036393	HAMAP:MF_00412	HAMAP:MF_00456	EntrezGene:P5CS	wikigene:P5CS
InterPro:P5_carboxy_syn	PFAM:PF00171	PFAM:PF00696	PIRSF:PIRSF036429	PRINTS:PR00474	ScanProsite:PS01223
PANTHER:PTHR11063	PANTHER:PTHR11063:SF16	SUPFAM:SSF53633	SUPFAM:SSF53720	TIGR:TC52705	TIGRFAMs:TIGR00407
TIGRFAMs:TIGR01027	TIGRFAMs:TIGR01092	UniParc:UPI0002107FE1	ArrayExpress:VIT_13s0019g02360	EnsemblPlantsGene:VIT_13s0019g02360	EnsemblPlants:VIT_13s0019g02360.t01
unigene:Vvi.109	SEG:seg	:	:	:	:

Description

Delta-1-pyrroline-5-carboxylate synthase [Source:UniProtKB/TrEMBL;Acc:F6HNT7]

Coordinates

chr13:-:3607037..3625153

Molecular Weight (calculated)

77770.7 Da

IEP (calculated)

7.067

GRAVY (calculated)

-0.052

Length

717 amino acids

Sequence
(BLAST)

001: MDAMDPTRAF VKDVKRLVIK FGTAVVTRSD GRLALGRLGA LCEQIKELNS QGYQVIVVTS GAVGLGRQRL RYRSLLNSSF ADLQKPQAEL DGKACAAVGQ
101: NNLMALYDTL FSQLDVTSAQ LLVTDNDFRD EAFRNQLTQT VDSLLALRVI PIFNENDAVS TRKAPYEDSS GIFWDNDSLA GLLALQLKAD LLVLLSDVDG
201: LYSGPPSDPR SKLIHTYLEK GHQGQITFGD KSRVGRGGMT AKVKSAVYSS QAGIPVVITS GYATGSILKV LNGERIGTLF HRDAYKWVQV KEVGAREMAV
301: AARESSRRLQ AMSSQDRKKI LLDIANALET NEELIKIEND ADVEAAQLAG YEKSLVSRLV LKPGKISSLA NSIRVLANME EPIGHVLKRT EVADGLILEK
401: MSCPLGVLLI VFESRPDALV QIASLAIRSG NGLLLKGGKE AKRSNAILHK VITEAIPDSV GKKLIGLVTS REEIPNLLKL DDVIDLVIPR GSNKLVSQIK
501: DSTKIPVLGH ADGICHVYVD KSANMDTAKH IVLDAKVDYP AACNAMETLL VHKDLVQTGG LNQLIVELRN EGVTLYGGPR ASALLNLPEA HSFHHEYNSM
601: ACTVEIVDDV HSAIDHIHRH GSAHTDCIIA EDLEVAEVFL RQVDSAAVFH NASTRFCDGA RFGLGAEVGI STSRIHARGP VGVEGLLTTR WILRGNGQVV
701: NGDKGVTYTH KELTLQP

Best Arabidopsis Sequence Match ( AT3G55610.1 )
(BLAST)

001: MTEIDRSRAF AKDVKRIVVK VGTAVVTGKG GRLALGRLGA ICEQLAELNS DGFEVILVSS GAVGLGRQRL RYRQLVNSSF ADLQKPQMEL DGKACAGVGQ
101: SSLMAYYETM FDQLDVTVAQ MLVTDSSFRD KDFRKQLSET VKAMLRMRVI PVFNENDAIS TRRAPYKDST GIFWDNDSLA ALLSLELKAD LLILLSDVEG
201: LYTGPPSDST SKLIHTFIKE KHQDEITFGE KSKLGRGGMT AKVKAAVNAA YGGVPVIITS GYAAENISKV LRGLRVGTLF HQDAHLWAPV VDTTSRDMAV
301: AARESSRKLQ ALSSEDRKQI LHDIANALEV NEKTIKAEND LDVAAAQEAG YEESLVARLV MKPGKISSLA ASVRQLAEME DPIGRVLKKT QVADDLILEK
401: TSSPIGVLLI VFESRPDALV QIASLAIRSG NGLLLKGGKE ARRSNAILHK VITDAIPETV GGKLIGLVTS REEIPDLLKL DDVIDLVIPR GSNKLVSQIK
501: NSTKIPVLGH ADGICHVYVD KSGKLDMAKR IVSDAKLDYP AACNAMETLL VHKDLEQNGF LDDLIYVLQT KGVTLYGGPR ASAKLNIPET KSFHHEYSSK
601: ACTVEIVEDV YGAIDHIHQH GSAHTDCIVT EDSEVAEIFL RQVDSAAVFH NASTRFSDGF RFGLGAEVGI STSRIHARGP VGVEGLLTTR WIMRGKGQVV
701: DGDNGIVYTH KDLPVLQRTE AVENGI

Arabidopsis Description

P5CSBDelta-1-pyrroline-5-carboxylate synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VF78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.