Factsheet for Solyc08g043170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g019170.2.1
Solyc08g043170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39800.1	Solyc06g019170.2.1	AT2G39800.1	21798944
AT2G39800.1	Solyc08g043170.2.1	AT2G39800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g019170.2.1	Tomato	nucleus, plastid, unclear	84.31	84.66
VIT_13s0019g02360.t01	Wine grape	cytosol	79.72	80.06
KRH73083	Soybean	endoplasmic reticulum	78.61	79.38
KRH15055	Soybean	nucleus	78.47	79.24
KRG97830	Soybean	endoplasmic reticulum	77.36	77.9
CDY20482	Canola	cytosol	76.53	76.85
Bra005012.1-P	Field mustard	cytosol	76.39	76.71
GSMUA_Achr10P...	Banana	cytosol	12.78	76.67
Bra000150.1-P	Field mustard	cytosol	76.11	76.64
CDY07635	Canola	cytosol	76.11	76.64
CDX74830	Canola	cytosol	76.25	76.57
CDY61781	Canola	cytosol	75.97	76.5
AT2G39800.1	Thale cress	cytosol	76.11	76.43
Os05t0455500-02	Rice	plasma membrane	75.69	76.12
GSMUA_Achr8P02490_001	Banana	cytosol	75.97	75.97
CDX93233	Canola	cytosol	75.14	75.45
CDY07034	Canola	cytosol	75.0	75.31
CDX76082	Canola	cytosol	74.86	75.28
Bra017051.1-P	Field mustard	cytosol	74.86	75.17
KXG22139	Sorghum	cytosol	74.58	75.0
HORVU1Hr1G072780.1	Barley	cytosol	74.44	74.86
Bra014732.1-P	Field mustard	cytosol	74.72	74.83
TraesCS1B01G290600.2	Wheat	mitochondrion	74.31	74.72
AT3G55610.1	Thale cress	cytosol	75.14	74.52
TraesCS1A01G281400.1	Wheat	cytosol	74.03	74.44
TraesCS1D01G280700.2	Wheat	golgi	74.03	74.44
CDY41203	Canola	cytosol	75.0	74.28
CDY65768	Canola	cytosol	74.86	74.24
CDY40241	Canola	cytosol	74.72	74.0
Bra007179.1-P	Field mustard	cytosol	74.58	73.87
Zm00001d038358_P002	Maize	cytosol	73.06	72.15
KXG33696	Sorghum	cytosol	72.64	71.74
TraesCS3B01G395900.1	Wheat	cytosol	71.67	70.68
TraesCS3D01G357200.1	Wheat	cytosol	71.67	70.68
Os01t0848200-02	Rice	plasma membrane	71.81	70.34
Zm00001d010056_P002	Maize	cytosol	74.86	70.18
TraesCS3A01G363700.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	70.28	66.23
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	27.36	66.11
HORVU3Hr1G085760.5	Barley	cytosol, plastid	72.22	62.95
Zm00001d012391_P003	Maize	cytosol, peroxisome, plasma membrane	65.56	62.52

Protein Annotations

KEGG:00330+1.2.1.41	KEGG:00330+2.7.2.11	KEGG:00330+2.7.2.11+1.2.1.41	KEGG:00332+1.2.1.41	KEGG:00332+2.7.2.11	KEGG:00332+2.7.2.11+1.2.1.41
Gene3D:3.40.1160.10	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.1.1.1.4.1.1	InterPro:AceGlu_kinase-like_sf	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	InterPro:Asp/Glu/Uridylate_kinase	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004349	GO:GO:0004350	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006561	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016491
GO:GO:0016620	GO:GO:0016740	GO:GO:0050661	GO:GO:0055114	GO:GO:0055129	InterPro:GPR_dom
InterPro:Glu/AcGlu_kinase	InterPro:Glu_5kinase/COase_Synthase	InterPro:Glutamate_5-kinase_CS	InterPro:IPR016162	InterPro:IPR016163	InterPro:IPR036393
UniProt:K4CK76	HAMAP:MF_00412	HAMAP:MF_00456	InterPro:P5_carboxy_syn	PFAM:PF00171	PFAM:PF00696
PIRSF:PIRSF036429	PRINTS:PR00474	ScanProsite:PS00902	PANTHER:PTHR11063	PANTHER:PTHR11063:SF16	SUPFAM:SSF53633
SUPFAM:SSF53720	EnsemblPlantsGene:Solyc08g043170.2	EnsemblPlants:Solyc08g043170.2.1	TIGRFAMs:TIGR00407	TIGRFAMs:TIGR01027	TIGRFAMs:TIGR01092
UniParc:UPI000276C26B	SEG:seg	:	:	:	:

Description

Delta-1-pyrroline-5-carboxylate synthase [Source:UniProtKB/TrEMBL;Acc:K4CK76]

Coordinates

chr8:+:22886600..22899430

Molecular Weight (calculated)

78012.8 Da

IEP (calculated)

6.566

GRAVY (calculated)

-0.032

Length

720 amino acids

Sequence
(BLAST)

001: METVDSTRAF VKNVKRLIVK VGTAVVTRAD GRLALGRLGA LCEQLQELNS QGYEVILVTS GAVGVGRQRL RYRKLLNSSF LDLQKPQTEL DGKACAAVGQ
101: NGLMALYDSL FSQLDVTSAQ LLVTDNDFRD PDFRRQLNDT VNSLLSLKVI PIFNENDAIS TRRAPYEDSS GIFWDNDSLA ALLALELKAD LLVLLSDVDG
201: LYSGPPRDPD SKLIYTYIKE IHERVITFGD KSRVGRGGMT AKVKAAMYAA YAGIPVVITS GFATDNIIKV LHGERIGTLF HCDANKWASI GETDAREMAV
301: AARACSRRLQ ALSSQERSKI LQDIADALEA NEKAILAENE ADVVAAQQAG YEKSLISRLA LNPGKISSLA NSVRVLSNMD EPLGHTLKRT EIADGFILEK
401: SSSPLGVVLI IFESRPDALV QIASLAVRSG NGLMLKGGKE AKRSNAILHK VITSAIPVSV GERLIGLVTS REEIPELLKL DDVIDLVIPR GSNKLVSQIK
501: ASTKIPVLGH ADGICHVYVD KSADMDMAKR ITVDAKIDYP AACNAMETLL VHKDLAQNGG LNDLIVELQT KGVSLYGGPK ASSLLMIPEA RTFRHEYSSL
601: ACTVEVVEDV YAAIDHIHQH GRHVIAHTDS IITEDQEVAE VFLRQVDSAA VFHNASTRFS DGFRFGLGAE VGISTGRIHA RGPVGVEGLL TTKWLARGSG
701: QIVDGDKSIV YSHKDLTQQG

Best Arabidopsis Sequence Match ( AT2G39800.1 )
(BLAST)

001: MEELDRSRAF ARDVKRIVVK VGTAVVTGKG GRLALGRLGA LCEQLAELNS DGFEVILVSS GAVGLGRQRL RYRQLVNSSF ADLQKPQTEL DGKACAGVGQ
101: SSLMAYYETM FDQLDVTAAQ LLVNDSSFRD KDFRKQLNET VKSMLDLRVI PIFNENDAIS TRRAPYQDSS GIFWDNDSLA ALLALELKAD LLILLSDVEG
201: LYTGPPSDPN SKLIHTFVKE KHQDEITFGD KSRLGRGGMT AKVKAAVNAA YAGIPVIITS GYSAENIDKV LRGLRVGTLF HQDARLWAPI TDSNARDMAV
301: AARESSRKLQ ALSSEDRKKI LLDIADALEA NVTTIKAENE LDVASAQEAG LEESMVARLV MTPGKISSLA ASVRKLADME DPIGRVLKKT EVADGLVLEK
401: TSSPLGVLLI VFESRPDALV QIASLAIRSG NGLLLKGGKE ARRSNAILHK VITDAIPETV GGKLIGLVTS REEIPDLLKL DDVIDLVIPR GSNKLVTQIK
501: NTTKIPVLGH ADGICHVYVD KACDTDMAKR IVSDAKLDYP AACNAMETLL VHKDLEQNAV LNELIFALQS NGVTLYGGPR ASKILNIPEA RSFNHEYCAK
601: ACTVEVVEDV YGAIDHIHRH GSAHTDCIVT EDHEVAELFL RQVDSAAVFH NASTRFSDGF RFGLGAEVGV STGRIHARGP VGVEGLLTTR WIMRGKGQVV
701: DGDNGIVYTH QDIPIQA

Arabidopsis Description

P5CSADelta-1-pyrroline-5-carboxylate synthase A [Source:UniProtKB/Swiss-Prot;Acc:P54887]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.