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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70904
CDX74830
CDX83574
CDX93233
CDX99737
CDY07034
CDY07635
CDY13601
CDY20482
CDY40982
CDY61781

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39800.1 CDX74830 AT2G39800.1 21798944
AT2G39800.1 CDX93233 AT2G39800.1 21798944
AT2G39800.1 CDY07034 AT2G39800.1 21798944
AT2G39800.1 CDY07635 AT2G39800.1 21798944
AT2G39800.1 CDY20482 AT2G39800.1 21798944
AT2G39800.1 CDY61781 AT2G39800.1 21798944
AT2G39800.1 CDX83574 AT3G25930.1 21798944
AT2G39800.1 CDX99737 AT3G25930.1 21798944
AT2G39800.1 CDY13601 AT3G25930.1 21798944
AT2G39800.1 CDY40982 AT3G25930.1 21798944
AT2G39800.1 CDX70904 AT5G20010.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005012.1-P Field mustard cytosol 99.72 99.72
CDX74830 Canola cytosol 99.58 99.58
AT2G39800.1 Thale cress cytosol 96.51 96.51
CDY07034 Canola cytosol 95.96 95.96
CDX93233 Canola cytosol 95.68 95.68
CDY07635 Canola cytosol 94.42 94.69
CDY61781 Canola cytosol 94.14 94.41
CDY41203 Canola cytosol 89.54 88.31
CDY40241 Canola cytosol 89.26 88.03
CDX76082 Canola cytosol 86.47 86.59
CDY65768 Canola cytosol 86.47 85.4
KRH73083 Soybean endoplasmic reticulum 77.82 78.26
KRH15055 Soybean nucleus 77.27 77.7
KRG97830 Soybean endoplasmic reticulum 76.85 77.06
Solyc08g043170.2.1 Tomato plastid 76.85 76.53
VIT_13s0019g02360.t01 Wine grape cytosol 76.29 76.29
PGSC0003DMT400068829 Potato cytosol 76.15 76.15
Solyc06g019170.2.1 Tomato nucleus, plastid, unclear 76.15 76.15
Os05t0455500-02 Rice plasma membrane 74.76 74.86
PGSC0003DMT400068827 Potato cytosol 65.69 74.53
KXG22139 Sorghum cytosol 73.5 73.6
HORVU1Hr1G072780.1 Barley cytosol 73.22 73.32
TraesCS1A01G281400.1 Wheat cytosol 73.22 73.32
TraesCS1D01G280700.2 Wheat golgi 73.08 73.18
TraesCS1B01G290600.2 Wheat mitochondrion 73.08 73.18
GSMUA_Achr8P02490_001 Banana cytosol 73.36 73.06
GSMUA_Achr10P... Banana cytosol 12.13 72.5
Zm00001d038358_P002 Maize cytosol 71.13 69.96
KXG33696 Sorghum cytosol 69.73 68.59
TraesCS3B01G395900.1 Wheat cytosol 69.73 68.49
TraesCS3D01G357200.1 Wheat cytosol 69.73 68.49
Os01t0848200-02 Rice plasma membrane 70.15 68.44
Zm00001d010056_P002 Maize cytosol 72.52 67.71
TraesCS3A01G363700.2 Wheat endoplasmic reticulum, golgi, plasma membrane 68.34 64.14
HORVU3Hr1G085760.5 Barley cytosol, plastid 70.43 61.14
Zm00001d012391_P003 Maize cytosol, peroxisome, plasma membrane 64.3 61.06
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 25.1 60.4
Protein Annotations
KEGG:00330+1.2.1.41KEGG:00330+2.7.2.11KEGG:00330+2.7.2.11+1.2.1.41KEGG:00332+1.2.1.41KEGG:00332+2.7.2.11KEGG:00332+2.7.2.11+1.2.1.41
Gene3D:3.40.1160.10Gene3D:3.40.309.10Gene3D:3.40.605.10MapMan:4.1.1.1.4.1.1GO:A0A078G6B4UniProt:A0A078G6B4
InterPro:AceGlu_kinase-like_sfInterPro:Ald_DH/histidinol_DHInterPro:Ald_DH_CInterPro:Ald_DH_NInterPro:Aldehyde_DH_domInterPro:Asp/Glu/Uridylate_kinase
EnsemblPlants:CDY20482ProteinID:CDY20482ProteinID:CDY20482.1ncoils:CoilInterPro:G-glutamylP_reductase_CSGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004349GO:GO:0004350GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006561GO:GO:0008150
GO:GO:0008152GO:GO:0008652GO:GO:0009058GO:GO:0009987GO:GO:0016301GO:GO:0016310
GO:GO:0016491GO:GO:0016620GO:GO:0016740GO:GO:0055114GO:GO:0055129InterPro:GPR_dom
EnsemblPlantsGene:GSBRNA2T00012577001InterPro:Glu/AcGlu_kinaseInterPro:Glu_5kinase/COase_SynthaseInterPro:Glutamate_5-kinase_CSInterPro:IPR016162InterPro:IPR016163
InterPro:IPR036393HAMAP:MF_00412HAMAP:MF_00456InterPro:P5_carboxy_synPFAM:PF00171PFAM:PF00696
PIRSF:PIRSF036429PRINTS:PR00474ScanProsite:PS00902ScanProsite:PS01223PANTHER:PTHR11063PANTHER:PTHR11063:SF16
MetaCyc:PWY-3341MetaCyc:PWY-6922SUPFAM:SSF53633SUPFAM:SSF53720TIGRFAMs:TIGR00407TIGRFAMs:TIGR01027
TIGRFAMs:TIGR01092UniPathway:UPA00098UniParc:UPI0004EDEC5ASEG:seg::
Description
BnaC04g05620DDelta-1-pyrroline-5-carboxylate synthase [Source:UniProtKB/TrEMBL;Acc:A0A078G6B4]
Coordinates
chrLK032108:-:417265..421823
Molecular Weight (calculated)
77749.4 Da
IEP (calculated)
6.222
GRAVY (calculated)
-0.079
Length
717 amino acids
Sequence
(BLAST)
001: MEELDRSRAF AKDVKRIVVK VGTAVVTGKG GRLALGRLGA LCEQLAELNS DGFEVILVSS GAVGLGRQRL RYRQLVNSSF ADLQKPQHEL DGKACAGVGQ
101: SSLMAYYETM FDQLDVTAAQ LLVNDSSFRD KEFRKQLNET VKSMLDLRVI PIFNENDAIS TRRAPYQDSS GIFWDNDSLA ALLALELKAD LLILLSDVEG
201: LYTGPPSDPN SKLIHTFIKE KHQDEITFGD KSRLGRGGMT AKVKAAVNAA YAGIPVIITS GYAAENIDKV LRGLRVGTLF HQDARLWAPI TDSTARDMAV
301: AARESSRKLQ ALSSEDRKQI LYSIADALEA NEKTIRAENE LDVATAQEAG LEESLVARLV MTPAKISSLA ASVRKLADME DPIGRVLKKT EVADGLVLEK
401: TSSPLGVLLI VFESRPDALV QIASLAIRSG NGLLLKGGKE ARRSNAILHK VITDAIPETV GGKLIGLVTS REEIPDLLKL DDVIDLVIPR GSNKLVSQIK
501: NTTKIPVLGH ADGICHVYVD KACNVDMAKR IVSDAKLDYP AACNAMETLL VHKDLEQNAV LNELIFALQS NGVTLYGGPK ASKILNLPEA RSFNHEYCSK
601: ACTVEVVEDV YGAIDHIHQH GSAHTDCIVT EDPEVAELFL RQVDSAAVFH NASTRFSDGF RFGLGAEVGI STGRIHARGP VGVEGLLTTR WIMRGKGQVV
701: DGDNGITYTH QDIPIQA
Best Arabidopsis Sequence Match ( AT2G39800.1 )
(BLAST)
001: MEELDRSRAF ARDVKRIVVK VGTAVVTGKG GRLALGRLGA LCEQLAELNS DGFEVILVSS GAVGLGRQRL RYRQLVNSSF ADLQKPQTEL DGKACAGVGQ
101: SSLMAYYETM FDQLDVTAAQ LLVNDSSFRD KDFRKQLNET VKSMLDLRVI PIFNENDAIS TRRAPYQDSS GIFWDNDSLA ALLALELKAD LLILLSDVEG
201: LYTGPPSDPN SKLIHTFVKE KHQDEITFGD KSRLGRGGMT AKVKAAVNAA YAGIPVIITS GYSAENIDKV LRGLRVGTLF HQDARLWAPI TDSNARDMAV
301: AARESSRKLQ ALSSEDRKKI LLDIADALEA NVTTIKAENE LDVASAQEAG LEESMVARLV MTPGKISSLA ASVRKLADME DPIGRVLKKT EVADGLVLEK
401: TSSPLGVLLI VFESRPDALV QIASLAIRSG NGLLLKGGKE ARRSNAILHK VITDAIPETV GGKLIGLVTS REEIPDLLKL DDVIDLVIPR GSNKLVTQIK
501: NTTKIPVLGH ADGICHVYVD KACDTDMAKR IVSDAKLDYP AACNAMETLL VHKDLEQNAV LNELIFALQS NGVTLYGGPR ASKILNIPEA RSFNHEYCAK
601: ACTVEVVEDV YGAIDHIHRH GSAHTDCIVT EDHEVAELFL RQVDSAAVFH NASTRFSDGF RFGLGAEVGV STGRIHARGP VGVEGLLTTR WIMRGKGQVV
701: DGDNGIVYTH QDIPIQA
Arabidopsis Description
P5CSADelta-1-pyrroline-5-carboxylate synthase A [Source:UniProtKB/Swiss-Prot;Acc:P54887]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.