Factsheet for PGSC0003DMT400068827

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400068827
PGSC0003DMT400068829

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39800.1	PGSC0003DMT400068827	AT2G39800.1	21798944
AT2G39800.1	PGSC0003DMT400068829	AT2G39800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068829	Potato	cytosol	99.05	87.31
Solyc06g019170.2.1	Tomato	nucleus, plastid, unclear	97.94	86.33
GSMUA_Achr10P...	Banana	cytosol	14.56	76.67
VIT_13s0019g02360.t01	Wine grape	cytosol	77.69	68.48
KRH15055	Soybean	nucleus	76.9	68.16
KRH73083	Soybean	endoplasmic reticulum	76.58	67.88
KRG97830	Soybean	endoplasmic reticulum	76.27	67.41
GSMUA_Achr8P02490_001	Banana	cytosol	75.63	66.39
AT2G39800.1	Thale cress	cytosol	75.16	66.25
CDX74830	Canola	cytosol	74.84	65.97
Bra005012.1-P	Field mustard	cytosol	74.68	65.83
CDY07635	Canola	cytosol	74.37	65.73
Bra000150.1-P	Field mustard	cytosol	74.37	65.73
CDY20482	Canola	cytosol	74.53	65.69
CDY61781	Canola	cytosol	74.21	65.59
CDX76082	Canola	cytosol	74.21	65.5
Bra014732.1-P	Field mustard	cytosol	74.21	65.23
Os05t0455500-02	Rice	plasma membrane	73.89	65.22
HORVU1Hr1G072780.1	Barley	cytosol	73.73	65.08
CDX93233	Canola	cytosol	73.58	64.85
TraesCS1B01G290600.2	Wheat	mitochondrion	73.26	64.66
CDY40241	Canola	cytosol	74.37	64.65
CDY41203	Canola	cytosol	74.37	64.65
CDY07034	Canola	cytosol	73.26	64.57
KXG22139	Sorghum	cytosol	73.1	64.53
TraesCS1A01G281400.1	Wheat	cytosol	73.1	64.53
Bra007179.1-P	Field mustard	cytosol	74.21	64.51
CDY65768	Canola	cytosol	74.05	64.46
TraesCS1D01G280700.2	Wheat	golgi	72.94	64.39
Bra017051.1-P	Field mustard	cytosol	72.94	64.3
AT3G55610.1	Thale cress	cytosol	73.26	63.77
Zm00001d038358_P002	Maize	cytosol	72.15	62.55
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	28.96	61.41
KXG33696	Sorghum	cytosol	70.73	61.32
Os01t0848200-02	Rice	plasma membrane	70.73	60.82
TraesCS3B01G395900.1	Wheat	cytosol	70.09	60.68
TraesCS3D01G357200.1	Wheat	cytosol	70.09	60.68
Zm00001d010056_P002	Maize	cytosol	73.58	60.55
TraesCS3A01G363700.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	68.99	57.07
Zm00001d012391_P003	Maize	cytosol, peroxisome, plasma membrane	65.19	54.57
HORVU3Hr1G085760.5	Barley	cytosol, plastid	70.41	53.87

Protein Annotations

KEGG:00330+1.2.1.41	KEGG:00330+2.7.2.11	KEGG:00330+2.7.2.11+1.2.1.41	KEGG:00332+1.2.1.41	KEGG:00332+2.7.2.11	KEGG:00332+2.7.2.11+1.2.1.41
Gene3D:3.40.1160.10	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.1.1.1.4.1.1	InterPro:AceGlu_kinase-like_sf	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	InterPro:Asp/Glu/Uridylate_kinase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004349	GO:GO:0004350	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006561	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016491	GO:GO:0016620	GO:GO:0016740	GO:GO:0055114	InterPro:GPR_dom
InterPro:Glu/AcGlu_kinase	InterPro:Glu_5kinase/COase_Synthase	InterPro:Glutamate_5-kinase_CS	InterPro:IPR016162	InterPro:IPR016163	InterPro:IPR036393
UniProt:M1CJJ3	HAMAP:MF_00456	InterPro:P5_carboxy_syn	PFAM:PF00171	PFAM:PF00696	EnsemblPlantsGene:PGSC0003DMG401026767
PGSC:PGSC0003DMG401026767	EnsemblPlants:PGSC0003DMT400068827	PIRSF:PIRSF036429	PRINTS:PR00474	ScanProsite:PS00902	PANTHER:PTHR11063
PANTHER:PTHR11063:SF16	SUPFAM:SSF53633	SUPFAM:SSF53720	TIGRFAMs:TIGR00407	TIGRFAMs:TIGR01027	TIGRFAMs:TIGR01092
UniParc:UPI000296A1E8	SEG:seg	:	:	:	:

Description

Delta 1-pyrroline-5-carboxylate synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG401026767]

Coordinates

chr6:+:15776950..15784535

Molecular Weight (calculated)

68450.7 Da

IEP (calculated)

5.987

GRAVY (calculated)

0.015

Length

632 amino acids

Sequence
(BLAST)

001: MDSADPARAF VKDVKRIIIK VGTAVVTRGD GRLALGRMGS LCEQIRELTS QGFEVILVTS GAVGVGRQRL RYRKLINSSF ADLQKPQGDL DGKACAAVGQ
101: NGLMALYDTL FSQLDVTSAQ LMVTDNDFRD PDFRRQLNET VNSLLCLKVV PIFNENDAIS TRKAPYEDSS GIFWDNDSLA ALLAMELKAD LLVLLSDVEG
201: LYTGPPSDPQ SELIHTYVKE KHEGLITFGD KSRVGRGGMT AKVKAAVYAA YAGIPVVITS GFANNNIIKA LDGQRVGTLF HREAIKWASI GDFDAREMAV
301: SARECARRLQ TLSSQERSKI LLDIADALEA KEEEILAENE ADVAAAQQSG YENSLISRLA MKPGKISSLA NSVRVLANMD EPVGRILKRT ELADGIILEK
401: TSSPLGVLLI IFESRPDALV QIASLAVRSG NGLLLKGGKE AKRSNAILHK VITSSIPPTV GERLIGLVTS REEIPELLKL DDVIDLVIPR GSNKLVSQIK
501: AATKIPVLGH ADGICHVFID KSADLDMAKR IVLDAKTDYP AACNAMETLL VHEDLVQTGG LNDLILELQV KGVSLFGGPK ASSVLSIPEA NSFHHEYGAL
601: ACTVEIVEDV NTAIEHIHRH GRQVTFLITI QF

Best Arabidopsis Sequence Match ( AT2G39800.1 )
(BLAST)

001: MEELDRSRAF ARDVKRIVVK VGTAVVTGKG GRLALGRLGA LCEQLAELNS DGFEVILVSS GAVGLGRQRL RYRQLVNSSF ADLQKPQTEL DGKACAGVGQ
101: SSLMAYYETM FDQLDVTAAQ LLVNDSSFRD KDFRKQLNET VKSMLDLRVI PIFNENDAIS TRRAPYQDSS GIFWDNDSLA ALLALELKAD LLILLSDVEG
201: LYTGPPSDPN SKLIHTFVKE KHQDEITFGD KSRLGRGGMT AKVKAAVNAA YAGIPVIITS GYSAENIDKV LRGLRVGTLF HQDARLWAPI TDSNARDMAV
301: AARESSRKLQ ALSSEDRKKI LLDIADALEA NVTTIKAENE LDVASAQEAG LEESMVARLV MTPGKISSLA ASVRKLADME DPIGRVLKKT EVADGLVLEK
401: TSSPLGVLLI VFESRPDALV QIASLAIRSG NGLLLKGGKE ARRSNAILHK VITDAIPETV GGKLIGLVTS REEIPDLLKL DDVIDLVIPR GSNKLVTQIK
501: NTTKIPVLGH ADGICHVYVD KACDTDMAKR IVSDAKLDYP AACNAMETLL VHKDLEQNAV LNELIFALQS NGVTLYGGPR ASKILNIPEA RSFNHEYCAK
601: ACTVEVVEDV YGAIDHIHRH GSAHTDCIVT EDHEVAELFL RQVDSAAVFH NASTRFSDGF RFGLGAEVGV STGRIHARGP VGVEGLLTTR WIMRGKGQVV
701: DGDNGIVYTH QDIPIQA

Arabidopsis Description

P5CSADelta-1-pyrroline-5-carboxylate synthase A [Source:UniProtKB/Swiss-Prot;Acc:P54887]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.