Factsheet for Solyc06g019170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g019170.2.1
Solyc08g043170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39800.1	Solyc06g019170.2.1	AT2G39800.1	21798944
AT2G39800.1	Solyc08g043170.2.1	AT2G39800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068829	Potato	cytosol	98.88	98.88
PGSC0003DMT400068827	Potato	cytosol	86.33	97.94
Solyc08g043170.2.1	Tomato	plastid	84.66	84.31
KRH15055	Soybean	nucleus	78.66	79.1
VIT_13s0019g02360.t01	Wine grape	cytosol	78.8	78.8
KRH73083	Soybean	endoplasmic reticulum	78.1	78.54
KRG97830	Soybean	endoplasmic reticulum	77.27	77.48
AT2G39800.1	Thale cress	cytosol	76.71	76.71
GSMUA_Achr10P...	Banana	cytosol	12.83	76.67
Bra005012.1-P	Field mustard	cytosol	76.29	76.29
CDY20482	Canola	cytosol	76.15	76.15
CDX74830	Canola	cytosol	76.15	76.15
CDY07635	Canola	cytosol	75.87	76.08
Bra000150.1-P	Field mustard	cytosol	75.87	76.08
GSMUA_Achr8P02490_001	Banana	cytosol	76.29	75.97
CDY61781	Canola	cytosol	75.73	75.94
CDX76082	Canola	cytosol	75.73	75.84
Bra014732.1-P	Field mustard	cytosol	75.87	75.66
Os05t0455500-02	Rice	plasma membrane	75.31	75.42
CDX93233	Canola	cytosol	75.31	75.31
HORVU1Hr1G072780.1	Barley	cytosol	75.17	75.28
CDY07034	Canola	cytosol	74.9	74.9
TraesCS1B01G290600.2	Wheat	mitochondrion	74.76	74.86
CDY41203	Canola	cytosol	75.87	74.83
CDY40241	Canola	cytosol	75.87	74.83
Bra017051.1-P	Field mustard	cytosol	74.76	74.76
TraesCS1A01G281400.1	Wheat	cytosol	74.62	74.72
Bra007179.1-P	Field mustard	cytosol	75.73	74.69
CDY65768	Canola	cytosol	75.59	74.66
TraesCS1D01G280700.2	Wheat	golgi	74.48	74.58
KXG22139	Sorghum	cytosol	74.34	74.44
AT3G55610.1	Thale cress	cytosol	75.31	74.38
Zm00001d038358_P002	Maize	cytosol	73.64	72.43
KXG33696	Sorghum	cytosol	72.11	70.92
Zm00001d010056_P002	Maize	cytosol	74.9	69.92
TraesCS3B01G395900.1	Wheat	cytosol	71.13	69.86
TraesCS3D01G357200.1	Wheat	cytosol	71.13	69.86
Os01t0848200-02	Rice	plasma membrane	71.55	69.8
TraesCS3A01G363700.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	70.15	65.84
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	26.22	63.09
Zm00001d012391_P003	Maize	cytosol, peroxisome, plasma membrane	66.11	62.78
HORVU3Hr1G085760.5	Barley	cytosol, plastid	71.69	62.23

Protein Annotations

KEGG:00330+1.2.1.41	KEGG:00330+2.7.2.11	KEGG:00330+2.7.2.11+1.2.1.41	KEGG:00332+1.2.1.41	KEGG:00332+2.7.2.11	KEGG:00332+2.7.2.11+1.2.1.41
Gene3D:3.40.1160.10	Gene3D:3.40.309.10	Gene3D:3.40.605.10	MapMan:4.1.1.1.4.1.1	InterPro:AceGlu_kinase-like_sf	InterPro:Ald_DH/histidinol_DH
InterPro:Ald_DH_C	InterPro:Ald_DH_N	InterPro:Aldehyde_DH_dom	InterPro:Asp/Glu/Uridylate_kinase	InterPro:G-glutamylP_reductase_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004349	GO:GO:0004350	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006561	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016491	GO:GO:0016620	GO:GO:0016740	GO:GO:0055114	GO:GO:0055129	InterPro:GPR_dom
InterPro:Glu/AcGlu_kinase	InterPro:Glu_5kinase/COase_Synthase	InterPro:Glutamate_5-kinase_CS	InterPro:IPR016162	InterPro:IPR016163	InterPro:IPR036393
UniProt:K4C4E2	HAMAP:MF_00412	HAMAP:MF_00456	InterPro:P5_carboxy_syn	PFAM:PF00171	PFAM:PF00696
PIRSF:PIRSF036429	PRINTS:PR00474	ScanProsite:PS00902	ScanProsite:PS01223	PANTHER:PTHR11063	PANTHER:PTHR11063:SF16
SUPFAM:SSF53633	SUPFAM:SSF53720	EnsemblPlantsGene:Solyc06g019170.2	EnsemblPlants:Solyc06g019170.2.1	TIGRFAMs:TIGR00407	TIGRFAMs:TIGR01027
TIGRFAMs:TIGR01092	UniParc:UPI000276571E	SEG:seg	:	:	:

Description

Delta-1-pyrroline-5-carboxylate synthase [Source:UniProtKB/TrEMBL;Acc:K4C4E2]

Coordinates

chr6:-:17955931..17964972

Molecular Weight (calculated)

77483.2 Da

IEP (calculated)

5.668

GRAVY (calculated)

-0.020

Length

717 amino acids

Sequence
(BLAST)

001: MDSADPARAF VKDVKRIIIK VGTAVVTRGD GRLALGRMGS LCEQIRELTS QGFEVILVTS GAVGVGRQRL RYRKLINSSF ADLQKPQGDL DGKACAAVGQ
101: NGLMALYDTL FSQLDVTSAQ LMVTDNDFRD PDFRRQLNET VNSLLCLKVV PIFNENDAIS TRKAPYEDSS GIFWDNDSLA ALLALELKAD LLVLLSDVEG
201: LYTGPPTDPQ SELIHTYVKE KHEGLITFGD KSRVGRGGMT AKVKAAVYAA YAGIPVVITS GFANNNIIKA LDGQRVGTLF HREAIKWASI GDFDAREMAV
301: SARECARRLQ TLSSQERSKI LLDIADALEA KEEEILAENE ADVAAAQQAG YENALISRLA MKPGKISSLA NSVRVLANMD EPVGRILKRT ELADGIILEK
401: TSSPLGVLLI IFESRPDALV QIASLAVRSG NGLLLKGGKE AKRSNAILHK VITSSIPPIV GERLIGLVTS REEIPELLKL DDVIDLVIPR GSNKLVSQIK
501: AATKIPVLGH ADGICHVFID KSADLDMAKR IVLDAKTDYP AACNAMETLL VHEDLVQTGG LNDLILELQE KGVSLFGGPK ASSVLNIPEA NSFHHEYGAL
601: ACTVEIVEDV NTAIEHIHRH GSAHTDSIIT EDKEVAELFL RQVDSAAVLH NASTRFSDGF RFGLGAEVGI STSRIHARGP VGVEGLLTTR WLARGSGQVV
701: DGDKEIVYTH KDLNLEA

Best Arabidopsis Sequence Match ( AT2G39800.1 )
(BLAST)

001: MEELDRSRAF ARDVKRIVVK VGTAVVTGKG GRLALGRLGA LCEQLAELNS DGFEVILVSS GAVGLGRQRL RYRQLVNSSF ADLQKPQTEL DGKACAGVGQ
101: SSLMAYYETM FDQLDVTAAQ LLVNDSSFRD KDFRKQLNET VKSMLDLRVI PIFNENDAIS TRRAPYQDSS GIFWDNDSLA ALLALELKAD LLILLSDVEG
201: LYTGPPSDPN SKLIHTFVKE KHQDEITFGD KSRLGRGGMT AKVKAAVNAA YAGIPVIITS GYSAENIDKV LRGLRVGTLF HQDARLWAPI TDSNARDMAV
301: AARESSRKLQ ALSSEDRKKI LLDIADALEA NVTTIKAENE LDVASAQEAG LEESMVARLV MTPGKISSLA ASVRKLADME DPIGRVLKKT EVADGLVLEK
401: TSSPLGVLLI VFESRPDALV QIASLAIRSG NGLLLKGGKE ARRSNAILHK VITDAIPETV GGKLIGLVTS REEIPDLLKL DDVIDLVIPR GSNKLVTQIK
501: NTTKIPVLGH ADGICHVYVD KACDTDMAKR IVSDAKLDYP AACNAMETLL VHKDLEQNAV LNELIFALQS NGVTLYGGPR ASKILNIPEA RSFNHEYCAK
601: ACTVEVVEDV YGAIDHIHRH GSAHTDCIVT EDHEVAELFL RQVDSAAVFH NASTRFSDGF RFGLGAEVGV STGRIHARGP VGVEGLLTTR WIMRGKGQVV
701: DGDNGIVYTH QDIPIQA

Arabidopsis Description

P5CSADelta-1-pyrroline-5-carboxylate synthase A [Source:UniProtKB/Swiss-Prot;Acc:P54887]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.