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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:endoplasmic reticulum
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG97830
KRH15055
KRH73083

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39800.1 KRG97830 AT2G39800.1 21798944
AT2G39800.1 KRH15055 AT2G39800.1 21798944
AT2G39800.1 KRH73083 AT2G39800.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH15055 Soybean nucleus 96.77 96.77
KRG97830 Soybean endoplasmic reticulum 87.94 87.69
VIT_13s0019g02360.t01 Wine grape cytosol 80.36 79.92
Solyc08g043170.2.1 Tomato plastid 79.38 78.61
Bra000150.1-P Field mustard cytosol 78.4 78.18
CDY07635 Canola cytosol 78.4 78.18
Solyc06g019170.2.1 Tomato nucleus, plastid, unclear 78.54 78.1
PGSC0003DMT400068829 Potato cytosol 78.4 77.96
CDY61781 Canola cytosol 78.12 77.9
Bra005012.1-P Field mustard cytosol 78.26 77.82
CDY20482 Canola cytosol 78.26 77.82
CDX74830 Canola cytosol 78.12 77.68
Os05t0455500-02 Rice plasma membrane 77.98 77.65
CDX76082 Canola cytosol 77.98 77.65
Bra014732.1-P Field mustard cytosol 77.84 77.19
KXG22139 Sorghum cytosol 77.42 77.09
CDX93233 Canola cytosol 77.28 76.85
AT3G55610.1 Thale cress cytosol 77.98 76.58
PGSC0003DMT400068827 Potato cytosol 67.88 76.58
AT2G39800.1 Thale cress cytosol 77.0 76.57
CDY07034 Canola cytosol 77.0 76.57
Bra017051.1-P Field mustard cytosol 77.0 76.57
CDY41203 Canola cytosol 77.98 76.48
Bra007179.1-P Field mustard cytosol 77.98 76.48
GSMUA_Achr8P02490_001 Banana cytosol 77.14 76.39
CDY40241 Canola cytosol 77.84 76.34
TraesCS1B01G290600.2 Wheat mitochondrion 76.58 76.26
CDY65768 Canola cytosol 77.56 76.17
TraesCS1A01G281400.1 Wheat cytosol 76.3 75.98
HORVU1Hr1G072780.1 Barley cytosol 76.16 75.84
TraesCS1D01G280700.2 Wheat golgi 75.88 75.56
KRH00047 Soybean cytosol 76.02 75.28
GSMUA_Achr10P... Banana cytosol 12.62 75.0
KRH65894 Soybean cytosol 78.26 73.81
KRH75663 Soybean endoplasmic reticulum 78.12 73.77
Zm00001d038358_P002 Maize cytosol 75.32 73.66
Zm00001d010056_P002 Maize cytosol 77.0 71.48
KXG33696 Sorghum cytosol 72.23 70.64
Os01t0848200-02 Rice plasma membrane 72.79 70.61
KRH49172 Soybean cytosol, plastid 75.74 70.59
TraesCS3B01G395900.1 Wheat cytosol 71.95 70.27
TraesCS3D01G357200.1 Wheat cytosol 71.95 70.27
TraesCS3A01G363700.2 Wheat endoplasmic reticulum, golgi, plasma membrane 71.11 66.36
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 27.07 64.77
Zm00001d012391_P003 Maize cytosol, peroxisome, plasma membrane 66.34 62.65
HORVU3Hr1G085760.5 Barley cytosol, plastid 72.37 62.47
KRH15781 Soybean cytosol 4.91 44.87
Protein Annotations
KEGG:00330+1.2.1.41KEGG:00330+2.7.2.11KEGG:00330+2.7.2.11+1.2.1.41KEGG:00332+1.2.1.41KEGG:00332+2.7.2.11KEGG:00332+2.7.2.11+1.2.1.41
EntrezGene:100809989Gene3D:3.40.1160.10Gene3D:3.40.309.10Gene3D:3.40.605.10MapMan:4.1.1.1.4.1.1EMBL:ACUP02001264
InterPro:AceGlu_kinase-like_sfInterPro:Ald_DH/histidinol_DHInterPro:Ald_DH_CInterPro:Ald_DH_NInterPro:Aldehyde_DH_domInterPro:Asp/Glu/Uridylate_kinase
InterPro:G-glutamylP_reductase_CSEnsemblPlantsGene:GLYMA_02G251100GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004349
GO:GO:0004350GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006561GO:GO:0008150GO:GO:0008152GO:GO:0008652GO:GO:0009058
GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016491GO:GO:0016620GO:GO:0016740
GO:GO:0055114GO:GO:0055129InterPro:GPR_domInterPro:Glu/AcGlu_kinaseInterPro:Glu_5kinase/COase_SynthaseInterPro:Glutamate_5-kinase_CS
UniProt:I1JI26InterPro:IPR016162InterPro:IPR016163InterPro:IPR036393EnsemblPlants:KRH73083ProteinID:KRH73083
ProteinID:KRH73083.1HAMAP:MF_00412HAMAP:MF_00456InterPro:P5_carboxy_synPFAM:PF00171PFAM:PF00696
PIRSF:PIRSF036429PRINTS:PR00474ScanProsite:PS00902ScanProsite:PS01223PANTHER:PTHR11063PANTHER:PTHR11063:SF16
MetaCyc:PWY-3341MetaCyc:PWY-6922SUPFAM:SSF53633SUPFAM:SSF53720TIGRFAMs:TIGR00407TIGRFAMs:TIGR01027
TIGRFAMs:TIGR01092UniParc:UPI0002336C00SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:-:43845202..43852326
Molecular Weight (calculated)
77534.4 Da
IEP (calculated)
6.834
GRAVY (calculated)
-0.058
Length
713 amino acids
Sequence
(BLAST)
001: MADPSRSFMK DVKRVIIKVG TAVVTREEGR LAVGRLGALC EQIKQLNSLG YDIILVSSGA VGIGRQRLRY RKLINSSFAD LQKPQHELDG KACAAVGQNS
101: LMALYDTLFT QLDVTSAQLL VTDNDFRDKD FRKQLTETVK SLLSLKVIPV FNENDAVSTR KAPYEDSSGI FWDNDSLSAL LALELKADLL VLLSDVEGLY
201: SGPPSDPHSK LIHTYIKEKH QNEITFGDKS RVGRGGMTAK VKAAVHAADA GIPVVITSGF AAENIINVLQ GQRIGTLFHK DAHEWVQVKE VDAREMAVAA
301: RECSRRLQAI SSEERNQILH KIADALEANE KIIRTENEAD IAVAQEAGYE KSLVARLAIK PGKIASLANN MRIIANMEDP IGQVLKRTEL SDGLILEKTS
401: SPLGVLLIVF ESRPDALVQI ASLAIRSGNG LLLKGGKEAR RSNAILHKVI TEAIPDTVGG KLIGLVTSRE EIPELLKLDD VIDLVIPRGS NKLVSQIKSS
501: TKIPVLGHAD GVCHVYVDKS ANVEMARRIV LDAKIDYPAA CNAMETLLVH KDLIEKGWLN DIVVDLRTEG VKLYGGPRAS SLLNIPQAQT FHHEYSSLAC
601: TVEIVDDVYA AIDHINLYGS AHTDSIVAED KEVANVFLRQ VDSAAVFHNA STRFSDGARF GLGAEVGIST SRIHARGPVG VEGLLTTRWI LKGSGQVVDG
701: DKGIVYTHKD IAT
Best Arabidopsis Sequence Match ( AT3G55610.1 )
(BLAST)
001: MTEIDRSRAF AKDVKRIVVK VGTAVVTGKG GRLALGRLGA ICEQLAELNS DGFEVILVSS GAVGLGRQRL RYRQLVNSSF ADLQKPQMEL DGKACAGVGQ
101: SSLMAYYETM FDQLDVTVAQ MLVTDSSFRD KDFRKQLSET VKAMLRMRVI PVFNENDAIS TRRAPYKDST GIFWDNDSLA ALLSLELKAD LLILLSDVEG
201: LYTGPPSDST SKLIHTFIKE KHQDEITFGE KSKLGRGGMT AKVKAAVNAA YGGVPVIITS GYAAENISKV LRGLRVGTLF HQDAHLWAPV VDTTSRDMAV
301: AARESSRKLQ ALSSEDRKQI LHDIANALEV NEKTIKAEND LDVAAAQEAG YEESLVARLV MKPGKISSLA ASVRQLAEME DPIGRVLKKT QVADDLILEK
401: TSSPIGVLLI VFESRPDALV QIASLAIRSG NGLLLKGGKE ARRSNAILHK VITDAIPETV GGKLIGLVTS REEIPDLLKL DDVIDLVIPR GSNKLVSQIK
501: NSTKIPVLGH ADGICHVYVD KSGKLDMAKR IVSDAKLDYP AACNAMETLL VHKDLEQNGF LDDLIYVLQT KGVTLYGGPR ASAKLNIPET KSFHHEYSSK
601: ACTVEIVEDV YGAIDHIHQH GSAHTDCIVT EDSEVAEIFL RQVDSAAVFH NASTRFSDGF RFGLGAEVGI STSRIHARGP VGVEGLLTTR WIMRGKGQVV
701: DGDNGIVYTH KDLPVLQRTE AVENGI
Arabidopsis Description
P5CSBDelta-1-pyrroline-5-carboxylate synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VF78]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.