CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40982	Canola	cytosol, nucleus, vacuole	96.67	96.67
AT3G25930.1	Thale cress	cytosol	77.33	75.32
CDY13601	Canola	nucleus	73.33	73.33
CDX83574	Canola	nucleus	72.67	70.32

Protein Annotations

EnsemblPlants:CDX99737	EnsemblPlantsGene:GSBRNA2T00108362001	Gene3D:3.40.50.620	GO:A0A078EFB3	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF55	PFAM:PF00582
ProteinID:CDX99737	ProteinID:CDX99737.1	SUPFAM:SSF52402	UniParc:UPI0001CAB123	MapMan:35.2	:

Description

BnaC02g35830D

Coordinates

chrLK031913:+:574414..576560

Molecular Weight (calculated)

16665.4 Da

IEP (calculated)

9.550

GRAVY (calculated)

-0.003

Length

150 amino acids

Sequence
(BLAST)

001: MKKVMVIIDE SNSSYDLLVW VLTNLKDVID SSKVVIFAKQ PQNSFTPPTA LSSSVGFAQI FYPFSANAEL MRLAQEKNTK IALGILEKAK KLCGNHGVKA
101: DTFTDVGDVK DIIHKIIQER KINLIAISDQ QNRNLKKCLP TTECSLVVVK

Best Arabidopsis Sequence Match ( AT3G25930.1 )
(BLAST)

001: MKNVMLIIDE SNASYDLLIW ALENQKDTIE SSKVYIFAKQ PQNSFTPPTV LSSSVGFAQI FYPFSPNSEL IRLAQEKNMK IALGILEKAK KICLNHGIKA
101: ETFTDDGDPK DLIRKIIQER NINLIVTSDQ QSLKKCTQNT DCSLLVVKKR LRKD

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LU98]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.