Factsheet for VIT_04s0008g05030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g02830.t01
VIT_06s0004g06880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20010.1	VIT_06s0004g06880.t01	AT1G07140.1	9025305
AT5G20010.1	VIT_03s0038g02830.t01	AT2G16950.1	14756317
AT5G20010.1	VIT_06s0004g06880.t01	AT2G30060.1	9025305
AT5G20020.1	VIT_06s0004g06880.t01	AT1G07140.1	9025305
AT5G20020.1	VIT_06s0004g06880.t01	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05940.t01	Wine grape	cytosol	70.49	97.29
VIT_04s0008g05020.t01	Wine grape	cytosol	70.16	96.83
AT5G20020.1	Thale cress	cytosol	69.51	95.93
AT5G20010.1	Thale cress	cytosol	68.85	95.02
Os01t0611100-01	Rice	plastid	68.85	95.02
Zm00001d044054_P002	Maize	cytosol	67.87	93.67
Zm00001d011474_P001	Maize	cytosol, plastid	67.87	93.67
KXG32999	Sorghum	cytosol	67.87	93.67
EES01060	Sorghum	cytosol	67.21	93.18
CDX70904	Canola	extracellular	68.85	88.61
Zm00001d011328_P001	Maize	cytosol	37.7	88.46
Zm00001d039091_P002	Maize	cytosol	67.54	87.29
VIT_11s0016g04780.t01	Wine grape	plastid	71.48	83.85
TraesCS7B01G254000.2	Wheat	cytosol	60.66	82.96
KXG22580	Sorghum	cytosol, nucleus	25.57	82.11
Zm00001d039090_P001	Maize	cytosol	67.54	81.42
VIT_18s0001g11670.t01	Wine grape	endoplasmic reticulum, extracellular	36.72	68.71
CDY61737	Canola	cytosol, mitochondrion, nucleus	13.44	61.19
TraesCS7D01G155200.2	Wheat	plastid	19.34	29.95

Protein Annotations

EntrezGene:100242237	wikigene:100242237	MapMan:23.5.1.4	Gene3D:3.40.50.300	ProteinID:CBI21001	ProteinID:CBI21001.3
UniProt:D7SUQ2	EMBL:FN595231	GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150
GO:GO:0015031	GO:GO:0016787	InterPro:IPR002041	EntrezGene:LOC100242237	wikigene:LOC100242237	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGR:TC68230	TIGRFAMs:TIGR00231	UniParc:UPI0001BE19B2	ArrayExpress:VIT_04s0008g05030	EnsemblPlantsGene:VIT_04s0008g05030
EnsemblPlants:VIT_04s0008g05030.t01	RefSeq:XP_002284971	RefSeq:XP_002284971.1	SEG:seg	:	:

Description

GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:D7SUQ2]

Coordinates

chr4:+:4521975..4526127

Molecular Weight (calculated)

35206.6 Da

IEP (calculated)

9.214

GRAVY (calculated)

-0.348

Length

305 amino acids

Sequence
(BLAST)

001: MPFCYNNNYC YFIKSKKIVI TKLFRDLIQR LREIASIKGY NENTRRLLIY IRLKLLLPPH SKLKPSFQSA PWRLPYEKLT LTLQMALPNQ QTVDYPSFKL
101: VIVGDGGTGK TTFVKRHLTG EFEKKYEPTI GVEVHPLDFF TNCGKIRFYC WDTAGQEKFG GLRDGYYIHG QCAIIMFDVT ARLTYKNVPT WHRDLCRVCE
201: NIPIVLCGNK VDVKNRQVKA KQVTFHRKKN LQYYEISAKS NYNFEKPFLY LARKLAGDVN LHFVESPALA PPEVQIDMAA QAHHEAELAA AAAQPLPDDD
301: DDTFE

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.