Factsheet for VIT_18s0001g11670.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011328_P001	Maize	cytosol	49.08	61.54
KXG22580	Sorghum	cytosol, nucleus	31.9	54.74
VIT_04s0008g05020.t01	Wine grape	cytosol	69.33	51.13
Solyc05g023800.2.1	Tomato	nucleus	69.33	51.13
PGSC0003DMT400016576	Potato	cytosol	69.33	51.13
KRH52483	Soybean	nucleus	68.71	50.68
KRH52484	Soybean	cytosol	68.71	50.68
KRH52485	Soybean	cytosol	68.71	50.68
KRH61808	Soybean	nucleus	68.71	50.68
KRH61811	Soybean	cytosol	68.71	50.68
PGSC0003DMT400076528	Potato	cytosol	68.71	50.68
Solyc01g104680.2.1	Tomato	cytosol	68.71	50.68
Solyc01g104700.2.1	Tomato	cytosol, nucleus	68.71	50.68
VIT_09s0002g05940.t01	Wine grape	cytosol	68.1	50.23
Zm00001d044054_P002	Maize	cytosol	67.48	49.77
Zm00001d011474_P001	Maize	cytosol, plastid	67.48	49.77
KXG32999	Sorghum	cytosol	67.48	49.77
Os01t0611100-01	Rice	plastid	66.26	48.87
HORVU0Hr1G030130.1	Barley	cytosol	65.03	48.85
EES01060	Sorghum	cytosol	64.42	47.73
Zm00001d039091_P002	Maize	cytosol	67.48	46.61
TraesCS7B01G254000.2	Wheat	cytosol	61.96	45.29
Zm00001d039090_P001	Maize	cytosol	67.48	43.48
VIT_11s0016g04780.t01	Wine grape	plastid	69.33	43.46
KRH61809	Soybean	nucleus	68.71	38.62
GSMUA_AchrUn_...	Banana	cytosol	52.76	38.05
VIT_04s0008g05030.t01	Wine grape	cytosol	68.71	36.72
TraesCS7D01G155200.2	Wheat	plastid	4.29	3.55

Protein Annotations

MapMan:23.5.1.4	Gene3D:3.40.50.300	ProteinID:CCB45905	ProteinID:CCB45905.1	UniProt:F6H028	EMBL:FN595227
GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006606	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0015031	GO:GO:0016787
InterPro:IPR002041	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071
PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
SignalP:SignalP-noTM	InterPro:Small_GTPase	UniParc:UPI00021086D1	ArrayExpress:VIT_18s0001g11670	EnsemblPlantsGene:VIT_18s0001g11670	EnsemblPlants:VIT_18s0001g11670.t01

Description

GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:F6H028]

Coordinates

chr18:-:9943150..9945526

Molecular Weight (calculated)

18664.8 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.046

Length

163 amino acids

Sequence
(BLAST)

001: MFVAASLLIF TYHSIFFILS SQEMNGYKEK FGGLRDGYYI NGQCAIIMFD VTAHLTYKNA PTWHRDLYRV CENIPIVLCG NKMDVKNRQV KAKQVTSHRK
101: NNLQCCEISA KSNYNFEMPF LYLARKFAGD VNLHLVGSLA LAPPEVHIDL APRKPFIPTL HIH

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.