Factsheet for PGSC0003DMT400076528

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400052941
PGSC0003DMT400078073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55190.1	PGSC0003DMT400052941	AT1G07140.1	9025305
AT5G55190.1	PGSC0003DMT400078073	AT1G07140.1	9025305
AT5G55190.1	PGSC0003DMT400052941	AT2G30060.1	9025305
AT5G55190.1	PGSC0003DMT400078073	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104700.2.1	Tomato	cytosol, nucleus	99.55	99.55
Solyc01g104680.2.1	Tomato	cytosol	99.55	99.55
PGSC0003DMT400016576	Potato	cytosol	98.64	98.64
KRH61811	Soybean	cytosol	95.93	95.93
KRH52484	Soybean	cytosol	95.93	95.93
AT5G55190.1	Thale cress	cytosol	95.48	95.48
KRH61808	Soybean	nucleus	95.48	95.48
VIT_04s0008g05020.t01	Wine grape	cytosol	95.48	95.48
KRH52485	Soybean	cytosol	95.48	95.48
KRH52483	Soybean	nucleus	95.48	95.48
Bra035562.1-P	Field mustard	cytosol, nucleus, plastid	94.57	94.57
Bra002926.1-P	Field mustard	cytosol, nucleus, plastid	93.67	93.67
Os01t0611100-01	Rice	plastid	93.21	93.21
CDY19907	Canola	cytosol	93.67	92.41
HORVU0Hr1G030130.1	Barley	cytosol	90.5	92.17
Zm00001d011474_P001	Maize	cytosol, plastid	90.5	90.5
Zm00001d044054_P002	Maize	cytosol	90.5	90.5
KXG32999	Sorghum	cytosol	90.5	90.5
EES01060	Sorghum	cytosol	89.59	90.0
Zm00001d039091_P002	Maize	cytosol	90.05	84.32
CDY06600	Canola	cytosol	94.57	84.27
Zm00001d011328_P001	Maize	cytosol	49.32	83.85
CDY20779	Canola	vacuole	94.12	81.89
TraesCS7B01G254000.2	Wheat	cytosol	81.9	81.17
VIT_11s0016g04780.t01	Wine grape	plastid	95.48	81.15
CDY17309	Canola	plastid	94.12	80.31
Zm00001d039090_P001	Maize	cytosol	90.05	78.66
KXG22580	Sorghum	cytosol, nucleus	33.03	76.84
KRH61809	Soybean	nucleus	95.93	73.1
PGSC0003DMT400078306	Potato	cytosol	71.95	69.13
VIT_18s0001g11670.t01	Wine grape	endoplasmic reticulum, extracellular	50.68	68.71
GSMUA_AchrUn_...	Banana	cytosol	67.87	66.37
TraesCS7D01G155200.2	Wheat	plastid	25.79	28.93

Protein Annotations

EntrezGene:102595232	EntrezGene:102595895	MapMan:23.5.1.4	Gene3D:3.40.50.300	ProteinID:ABA81874	ProteinID:ABA81874.1
ProteinID:ABB02641	ProteinID:ABB02641.1	EMBL:DQ207866	EMBL:DQ222510	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0015031
GO:GO:0016787	InterPro:IPR002041	RefSeq:NP_001274933.1	InterPro:P-loop_NTPase	PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400029753
PGSC:PGSC0003DMG400029753	EnsemblPlants:PGSC0003DMT400076528	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071	PANTHER:PTHR24071:SF7
UniProt:Q38JH1	InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00005D37DB	RefSeq:XP_006351825.1
SEG:seg	:	:	:	:	:

Description

GTP-binding nuclear protein Ran2 [Source:PGSC_GENE;Acc:PGSC0003DMG400029753]

Coordinates

chr1:-:81494465..81497809

Molecular Weight (calculated)

25219.1 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.435

Length

221 amino acids

Sequence
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDGNLHFV ESPALAPPEV QIDLAAQALH
201: EQELQQALNQ PLPDDDDEAF E

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.