CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91719
KRH35051

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55190.1	KRG91719	AT1G07140.1	9025305
AT5G55190.1	KRH35051	AT1G07140.1	9025305
AT5G55190.1	KRG91719	AT2G30060.1	9025305
AT5G55190.1	KRH35051	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61811	Soybean	cytosol	99.55	99.55
KRH52484	Soybean	cytosol	99.55	99.55
KRH61808	Soybean	nucleus	98.19	98.19
KRH52483	Soybean	nucleus	98.19	98.19
AT5G55190.1	Thale cress	cytosol	97.74	97.74
Bra035562.1-P	Field mustard	cytosol, nucleus, plastid	97.29	97.29
Bra002926.1-P	Field mustard	cytosol, nucleus, plastid	96.38	96.38
Solyc01g104680.2.1	Tomato	cytosol	95.93	95.93
PGSC0003DMT400016576	Potato	cytosol	95.93	95.93
Solyc01g104700.2.1	Tomato	cytosol, nucleus	95.93	95.93
Solyc05g023800.2.1	Tomato	nucleus	95.93	95.93
PGSC0003DMT400076528	Potato	cytosol	95.48	95.48
CDY19907	Canola	cytosol	96.38	95.09
Os01t0611100-01	Rice	plastid	95.02	95.02
HORVU0Hr1G030130.1	Barley	cytosol	93.21	94.93
Zm00001d044054_P002	Maize	cytosol	92.31	92.31
Zm00001d011474_P001	Maize	cytosol, plastid	92.31	92.31
KXG32999	Sorghum	cytosol	92.31	92.31
EES01060	Sorghum	cytosol	91.86	92.27
Zm00001d011328_P001	Maize	cytosol	51.58	87.69
KRH56644	Soybean	cytosol	86.88	86.88
Zm00001d039091_P002	Maize	cytosol	92.76	86.86
CDY06600	Canola	cytosol	97.29	86.69
CDY20779	Canola	vacuole	96.83	84.25
TraesCS7B01G254000.2	Wheat	cytosol	84.16	83.41
CDY17309	Canola	plastid	96.83	82.63
KXG22580	Sorghum	cytosol, nucleus	35.29	82.11
Zm00001d039090_P001	Maize	cytosol	92.76	81.03
KRH61809	Soybean	nucleus	99.55	75.86
VIT_18s0001g11670.t01	Wine grape	endoplasmic reticulum, extracellular	50.68	68.71
GSMUA_AchrUn_...	Banana	cytosol	69.68	68.14
TraesCS7D01G155200.2	Wheat	plastid	25.79	28.93

Protein Annotations

EntrezGene:100801379	MapMan:23.5.1.4	Gene3D:3.40.50.300	UniProt:A0A0R0JJA1	EMBL:ACUP02003419	EnsemblPlantsGene:GLYMA_06G070700
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0006913
GO:GO:0008150	GO:GO:0015031	GO:GO:0016787	InterPro:IPR002041	EnsemblPlants:KRH52485	ProteinID:KRH52485
ProteinID:KRH52485.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418	PANTHER:PTHR24071
PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00019AA8E7	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:5409185..5412525

Molecular Weight (calculated)

25134.0 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.392

Length

221 amino acids

Sequence
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDPNLHFV ESPALAPPEV LIDLAAQQQH
201: EAELLAAASQ PLPDDDDESF E

Best Arabidopsis Sequence Match ( AT5G20010.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ETPALAPPEV HIDIADQQKN
201: EAELLQAAAQ PLPDDDDDIF E

Arabidopsis Description

RAN1GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UC18]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.