CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91719
KRH35051

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55190.1	KRG91719	AT1G07140.1	9025305
AT5G55190.1	KRH35051	AT1G07140.1	9025305
AT5G55190.1	KRG91719	AT2G30060.1	9025305
AT5G55190.1	KRH35051	AT2G30060.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61811	Soybean	cytosol	76.21	100.0
KRH52484	Soybean	cytosol	76.21	100.0
KRH52485	Soybean	cytosol	75.86	99.55
KRH52483	Soybean	nucleus	75.17	98.64
KRH61808	Soybean	nucleus	75.17	98.64
AT5G55190.1	Thale cress	cytosol	74.83	98.19
Bra035562.1-P	Field mustard	cytosol, nucleus, plastid	74.48	97.74
Bra002926.1-P	Field mustard	cytosol, nucleus, plastid	73.79	96.83
Solyc01g104700.2.1	Tomato	cytosol, nucleus	73.45	96.38
Solyc01g104680.2.1	Tomato	cytosol	73.45	96.38
PGSC0003DMT400016576	Potato	cytosol	73.1	95.93
Solyc05g023800.2.1	Tomato	nucleus	73.1	95.93
PGSC0003DMT400076528	Potato	cytosol	73.1	95.93
CDY19907	Canola	cytosol	73.79	95.54
HORVU0Hr1G030130.1	Barley	cytosol	71.38	95.39
Os01t0611100-01	Rice	plastid	72.41	95.02
Zm00001d044054_P002	Maize	cytosol	70.69	92.76
Zm00001d011474_P001	Maize	cytosol, plastid	70.69	92.76
KXG32999	Sorghum	cytosol	70.69	92.76
EES01060	Sorghum	cytosol	70.0	92.27
Zm00001d011328_P001	Maize	cytosol	39.31	87.69
CDY06600	Canola	cytosol	74.83	87.5
CDY20779	Canola	vacuole	76.21	87.01
KRH56644	Soybean	cytosol	66.21	86.88
Zm00001d039091_P002	Maize	cytosol	70.69	86.86
CDY17309	Canola	plastid	75.52	84.56
TraesCS7B01G254000.2	Wheat	cytosol	64.14	83.41
KXG22580	Sorghum	cytosol, nucleus	26.9	82.11
Zm00001d039090_P001	Maize	cytosol	70.69	81.03
GSMUA_AchrUn_...	Banana	cytosol	53.79	69.03
VIT_18s0001g11670.t01	Wine grape	endoplasmic reticulum, extracellular	38.62	68.71
TraesCS7D01G155200.2	Wheat	plastid	20.34	29.95

Protein Annotations

EntrezGene:100813605	EntrezGene:100814146	MapMan:23.5.1.4	Gene3D:3.40.50.300	UniProt:A0A0R0K544	EMBL:ACUP02002190
EnsemblPlantsGene:GLYMA_04G069200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006810
GO:GO:0006913	GO:GO:0008150	GO:GO:0015031	GO:GO:0016787	InterPro:IPR002041	EnsemblPlants:KRH61809
ProteinID:KRH61809	ProteinID:KRH61809.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00627	PFscan:PS51418
PANTHER:PTHR24071	PANTHER:PTHR24071:SF7	InterPro:Ran_GTPase	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0006EE0E4A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:5773448..5776504

Molecular Weight (calculated)

33106.6 Da

IEP (calculated)

8.539

GRAVY (calculated)

-0.397

Length

290 amino acids

Sequence
(BLAST)

001: MTEVWQFWIW AGGATQQSGS CKERLTRSFK IRNLKPSQYK PSLRCVLSLS SASLSILFNL TQHRYTLHSM ALPNQQTVDY PSFKLVIVGD GGTGKTTFVK
101: RHLTGEFEKK YEPTIGVEVH PLDFFTNCGK IRFYCWDTAG QEKFGGLRDG YYIHGQCAII MFDVTARLTY KNVPTWHRDL CRVCENIPIV LCGNKVDVKN
201: RQVKAKQVTF HRKKNLQYYE ISAKSNYNFE KPFLYLARKL AGDPNLHFVE SPALAPPEVQ IDLAAQQQHE AELLAAASQP LPDDDDESFE

Best Arabidopsis Sequence Match ( AT5G55190.1 )
(BLAST)

001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E

Arabidopsis Description

RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.