Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra035562.1-P | Field mustard | cytosol, nucleus, plastid | 97.77 | 99.09 |
AT5G55190.1 | Thale cress | cytosol | 96.43 | 97.74 |
VIT_04s0008g05020.t01 | Wine grape | cytosol | 95.98 | 97.29 |
KRH61811 | Soybean | cytosol | 95.54 | 96.83 |
KRH61808 | Soybean | nucleus | 95.54 | 96.83 |
KRH52484 | Soybean | cytosol | 95.54 | 96.83 |
KRH52483 | Soybean | nucleus | 95.54 | 96.83 |
KRH52485 | Soybean | cytosol | 95.09 | 96.38 |
Os01t0611100-01 | Rice | plastid | 92.86 | 94.12 |
Solyc01g104680.2.1 | Tomato | cytosol | 92.86 | 94.12 |
Solyc01g104700.2.1 | Tomato | cytosol, nucleus | 92.86 | 94.12 |
PGSC0003DMT400076528 | Potato | cytosol | 92.41 | 93.67 |
Solyc05g023800.2.1 | Tomato | nucleus | 92.41 | 93.67 |
PGSC0003DMT400016576 | Potato | cytosol | 92.41 | 93.67 |
HORVU0Hr1G030130.1 | Barley | cytosol | 90.62 | 93.55 |
Zm00001d011474_P001 | Maize | cytosol, plastid | 91.52 | 92.76 |
Zm00001d044054_P002 | Maize | cytosol | 91.52 | 92.76 |
KXG32999 | Sorghum | cytosol | 91.52 | 92.76 |
EES01060 | Sorghum | cytosol | 90.62 | 92.27 |
Zm00001d011328_P001 | Maize | cytosol | 51.79 | 89.23 |
CDY06600 | Canola | cytosol | 97.77 | 88.31 |
CDX70904 | Canola | extracellular | 93.3 | 88.19 |
Zm00001d039091_P002 | Maize | cytosol | 91.52 | 86.86 |
CDY20779 | Canola | vacuole | 98.21 | 86.61 |
CDY17309 | Canola | plastid | 97.77 | 84.56 |
KXG22580 | Sorghum | cytosol, nucleus | 35.71 | 84.21 |
VIT_11s0016g04780.t01 | Wine grape | plastid | 95.98 | 82.69 |
TraesCS7B01G254000.2 | Wheat | cytosol | 82.14 | 82.51 |
Zm00001d039090_P001 | Maize | cytosol | 91.52 | 81.03 |
KRH61809 | Soybean | nucleus | 95.54 | 73.79 |
GSMUA_AchrUn_... | Banana | cytosol | 69.2 | 68.58 |
CDY61737 | Canola | cytosol, mitochondrion, nucleus | 18.3 | 61.19 |
TraesCS7D01G155200.2 | Wheat | plastid | 24.55 | 27.92 |
Protein Annotations
MapMan:23.5.1.4 | Gene3D:3.40.50.300 | GO:A0A078G4L1 | UniProt:A0A078G4L1 | EnsemblPlants:CDY19907 | ProteinID:CDY19907 |
ProteinID:CDY19907.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006810 |
GO:GO:0006913 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00009696001 | InterPro:IPR002041 |
InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00627 | PFscan:PS51418 | PANTHER:PTHR24071 | PANTHER:PTHR24071:SF7 |
InterPro:Ran_GTPase | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EE593B | SEG:seg | : |
Description
BnaC09g31730DGTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4L1]
Coordinates
chrLK032101:-:486011..487777
Molecular Weight (calculated)
25444.3 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.410
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLSAVPNQQ TVDYPSFKLV IVGDGGTGKT TFVKRHLTGE FEKKYEPTIG VEVHPLDFFT NCGKIRFYCW DTAGQEKFGG LRDGYYIHGQ CAVIMFDVTA
101: RLTYKNVPTW HRDLCRVCEN IPIVLCGNKV DVKNRQVKAK QVTFHRKKNL QYYEISAKSN YNFEKPFLYL ARKLAGDPNL HFVESPALAP PEVQIDMAAQ
201: QQHEAELAAA ASQPLPDDDD DTFE
101: RLTYKNVPTW HRDLCRVCEN IPIVLCGNKV DVKNRQVKAK QVTFHRKKNL QYYEISAKSN YNFEKPFLYL ARKLAGDPNL HFVESPALAP PEVQIDMAAQ
201: QQHEAELAAA ASQPLPDDDD DTFE
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
Arabidopsis Description
RAN3GTP-binding nuclear protein [Source:UniProtKB/TrEMBL;Acc:A0A178UD71]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.