CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70904
CDY06600
CDY17309
CDY19907
CDY20779

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	CDX70904	AT5G20010.1	9025305
AT1G07140.1	CDY06600	AT5G55190.1	21798944
AT1G07140.1	CDY17309	AT5G55190.1	21798944
AT1G07140.1	CDY19907	AT5G55190.1	21798944
AT1G07140.1	CDY20779	AT5G55190.1	21798944
AT1G07140.1	CDY06600	AT5G55190.1	9025305
AT1G07140.1	CDY17309	AT5G55190.1	9025305
AT1G07140.1	CDY19907	AT5G55190.1	9025305
AT1G07140.1	CDY20779	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015554.1-P	Field mustard	cytosol	100.0	100.0
CDX86496	Canola	cytosol	90.0	88.39
CDY15604	Canola	cytosol	89.09	87.5
CDY09935	Canola	cytosol	89.09	87.11
CDX86501	Canola	cytosol	16.82	86.05
CDY59068	Canola	cytosol	86.36	84.44
AT1G07140.1	Thale cress	cytosol	86.36	83.33
CDX84862	Canola	cytosol	75.0	74.66
CDY24034	Canola	cytosol	71.82	73.49
CDY10250	Canola	plastid	81.82	73.17
Solyc06g082120.2.1	Tomato	extracellular	67.27	70.14
PGSC0003DMT400052941	Potato	cytosol	67.27	69.81
PGSC0003DMT400078073	Potato	cytosol	67.73	67.42
GSMUA_Achr7P22420_001	Banana	cytosol	58.64	62.93
GSMUA_Achr11P...	Banana	cytosol	58.18	61.84
Os03t0292800-01	Rice	plastid	58.18	61.24
TraesCS4D01G194600.1	Wheat	cytosol	56.36	60.19
GSMUA_Achr11P...	Banana	cytosol	58.18	60.09
EER92413	Sorghum	cytosol	56.36	59.33
TraesCS4A01G110400.1	Wheat	cytosol	55.45	58.94
GSMUA_Achr10P...	Banana	cytosol	56.36	58.77
Os05t0350600-01	Rice	cytosol, plasma membrane, plastid	58.64	58.64
TraesCS4B01G193600.1	Wheat	cytosol	55.0	58.45
TraesCS1A01G223800.1	Wheat	cytosol	58.64	58.11
TraesCS1B01G237100.1	Wheat	cytosol	58.64	58.11
TraesCS1D01G225400.1	Wheat	cytosol	58.64	58.11
HORVU1Hr1G059970.2	Barley	cytosol	57.27	57.53
EES19356	Sorghum	cytosol	57.73	57.47
Zm00001d010504_P001	Maize	extracellular	57.27	57.01
GSMUA_Achr9P04480_001	Banana	cytosol	56.82	56.56
Zm00001d028755_P001	Maize	cytosol	56.82	55.56
Zm00001d047727_P002	Maize	cytosol	55.45	53.98
CDX80354	Canola	cytosol	21.36	52.81
Zm00001d037993_P001	Maize	cytosol	58.64	46.74
HORVU4Hr1G056140.3	Barley	plastid	55.45	44.2

Protein Annotations

Gene3D:2.30.29.30	MapMan:23.5.1.6	GO:A0A078F1E1	EnsemblPlants:CDY06679	ProteinID:CDY06679	ProteinID:CDY06679.1
GO:GO:0006810	GO:GO:0008150	GO:GO:0046907	EnsemblPlantsGene:GSBRNA2T00122849001	InterPro:IPR000156	InterPro:IPR011993
PFAM:PF00638	InterPro:PH-like_dom_sf	PFscan:PS50196	PANTHER:PTHR23138	PANTHER:PTHR23138:SF107	InterPro:Ran_bind_dom
SMART:SM00160	SUPFAM:SSF50729	UniParc:UPI0002544D96	SEG:seg	:	:

Description

BnaA10g04580D

Coordinates

chrLK031972:-:233350..235046

Molecular Weight (calculated)

24859.9 Da

IEP (calculated)

4.514

GRAVY (calculated)

-0.915

Length

220 amino acids

Sequence
(BLAST)

001: MATNEPEHET RDAEEAGANE DEDTGAQIAP IVRLEEVAIT TGEEDEDAVL DLKSKLYRFD KEANQWKERG AGTVKLLKHK DTGKIRLVMR QSKTLRICAN
101: HFVKPGMAVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKLFM QKFNEVAESE VEKEESKDAS ETAGLLEKLT VEETKTEEKV KTEVEAEEKK
201: KSEPEKADEE KKTEEAAPST

Best Arabidopsis Sequence Match ( AT1G07140.1 )
(BLAST)

001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST

Arabidopsis Description

RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.