Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92413 | Sorghum | cytosol | 84.0 | 90.43 |
| Zm00001d047727_P002 | Maize | cytosol | 88.44 | 88.05 |
| Os03t0292800-01 | Rice | plastid | 78.67 | 84.69 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 70.67 | 77.18 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 70.67 | 76.81 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 70.22 | 76.33 |
| GSMUA_Achr11P... | Banana | cytosol | 63.56 | 69.08 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 62.67 | 68.78 |
| Zm00001d010504_P001 | Maize | extracellular | 64.44 | 65.61 |
| GSMUA_Achr11P... | Banana | cytosol | 59.56 | 62.91 |
| GSMUA_Achr10P... | Banana | cytosol | 57.33 | 61.14 |
| CDX86501 | Canola | cytosol | 11.56 | 60.47 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 58.22 | 59.55 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 59.11 | 59.38 |
| PGSC0003DMT400021160 | Potato | cytosol | 58.67 | 58.93 |
| KRH65697 | Soybean | cytosol | 50.67 | 57.29 |
| CDX84862 | Canola | cytosol | 56.0 | 57.01 |
| HORVU4Hr1G056140.3 | Barley | plastid | 69.78 | 56.88 |
| KRH35051 | Soybean | endoplasmic reticulum | 55.11 | 56.88 |
| CDY06679 | Canola | cytosol | 55.56 | 56.82 |
| Bra015554.1-P | Field mustard | cytosol | 55.56 | 56.82 |
| Bra022775.1-P | Field mustard | cytosol | 55.56 | 56.56 |
| CDY09935 | Canola | cytosol | 56.44 | 56.44 |
| KRG91719 | Soybean | endoplasmic reticulum | 55.56 | 56.05 |
| CDY59068 | Canola | cytosol | 56.0 | 56.0 |
| CDX86496 | Canola | cytosol | 55.56 | 55.8 |
| Bra030675.1-P | Field mustard | cytosol | 55.56 | 55.8 |
| CDY15604 | Canola | cytosol | 55.56 | 55.8 |
| Bra031555.1-P | Field mustard | cytosol | 56.44 | 55.7 |
| CDY24034 | Canola | cytosol | 52.89 | 55.35 |
| AT2G30060.1 | Thale cress | cytosol | 53.33 | 55.3 |
| AT5G58590.1 | Thale cress | cytosol | 53.78 | 55.25 |
| KRH75945 | Soybean | cytosol | 56.0 | 55.02 |
| AT1G07140.1 | Thale cress | cytosol | 54.67 | 53.95 |
| Zm00001d037993_P001 | Maize | cytosol | 64.0 | 52.17 |
| CDX80354 | Canola | cytosol | 20.0 | 50.56 |
| CDY10250 | Canola | plastid | 47.56 | 43.5 |
Protein Annotations
| EntrezGene:100193549 | Gene3D:2.30.29.30 | MapMan:23.5.1.6 | UniProt:A0A1D6JZE5 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0046907 | InterPro:IPR000156 | InterPro:IPR011993 |
| ProteinID:ONL96963.1 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 | PANTHER:PTHR23138 | PANTHER:PTHR23138:SF105 |
| InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI00084482B9 | EnsemblPlantsGene:Zm00001d028755 | EnsemblPlants:Zm00001d028755_P001 |
| EnsemblPlants:Zm00001d028755_T001 | SEG:seg | : | : | : | : |
Description
Ran-binding protein 1 homolog a
Coordinates
chr1:-:45602342..45605011
Molecular Weight (calculated)
24903.9 Da
IEP (calculated)
4.435
GRAVY (calculated)
-0.772
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEPAEHRPA EEEEAAAAGE DEDTGAQVAP IVKLEEVAVT TGEEDEDALL DMKAKLYRFD KEGNQWKERG TGTVKLLKHK DTAKVRLVMR QAKTLKICAN
101: HLGFDIGEYS LPLFSVRTVV ATTKMQEHAG SDKSCVWHAL DFADGELKEE MFAIRFGSVE NCKKFKDTVE EIAEQQGKSE EKENDEVSTA ASDLAQKLTV
201: AEPSKEENAE KEEAPASDDK KDAKE
101: HLGFDIGEYS LPLFSVRTVV ATTKMQEHAG SDKSCVWHAL DFADGELKEE MFAIRFGSVE NCKKFKDTVE EIAEQQGKSE EKENDEVSTA ASDLAQKLTV
201: AEPSKEENAE KEEAPASDDK KDAKE
001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
Arabidopsis Description
RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.