Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7B01G254000.2 | |
| TraesCS7D01G155200.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G110400.1 | Wheat | cytosol | 97.09 | 96.62 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 96.12 | 95.65 |
| EER92413 | Sorghum | cytosol | 79.61 | 78.47 |
| Os03t0292800-01 | Rice | plastid | 79.13 | 77.99 |
| HORVU4Hr1G056140.3 | Barley | plastid | 95.15 | 71.01 |
| Zm00001d047727_P002 | Maize | cytosol | 77.67 | 70.8 |
| Zm00001d028755_P001 | Maize | cytosol | 77.18 | 70.67 |
| TraesCS1D01G225400.1 | Wheat | cytosol | 74.27 | 68.92 |
| GSMUA_Achr11P... | Banana | cytosol | 67.48 | 67.15 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 64.56 | 64.88 |
| GSMUA_Achr11P... | Banana | cytosol | 66.5 | 64.32 |
| GSMUA_Achr10P... | Banana | cytosol | 65.53 | 63.98 |
| KRH35051 | Soybean | endoplasmic reticulum | 61.65 | 58.26 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 62.14 | 58.18 |
| CDX86501 | Canola | cytosol | 12.14 | 58.14 |
| KRG91719 | Soybean | endoplasmic reticulum | 62.62 | 57.85 |
| AT2G30060.1 | Thale cress | cytosol | 60.68 | 57.6 |
| CDX84862 | Canola | cytosol | 61.65 | 57.47 |
| CDY24034 | Canola | cytosol | 59.71 | 57.21 |
| Bra022775.1-P | Field mustard | cytosol | 61.16 | 57.01 |
| CDY06679 | Canola | cytosol | 60.19 | 56.36 |
| Bra015554.1-P | Field mustard | cytosol | 60.19 | 56.36 |
| PGSC0003DMT400021160 | Potato | cytosol | 60.68 | 55.8 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 60.68 | 55.8 |
| CDX86496 | Canola | cytosol | 60.19 | 55.36 |
| CDY15604 | Canola | cytosol | 59.71 | 54.91 |
| Bra030675.1-P | Field mustard | cytosol | 59.71 | 54.91 |
| KRH65697 | Soybean | cytosol | 52.91 | 54.77 |
| CDY59068 | Canola | cytosol | 59.71 | 54.67 |
| CDY09935 | Canola | cytosol | 59.71 | 54.67 |
| AT1G07140.1 | Thale cress | cytosol | 60.19 | 54.39 |
| Bra031555.1-P | Field mustard | cytosol | 60.19 | 54.39 |
| AT5G58590.1 | Thale cress | cytosol | 57.28 | 53.88 |
| KRH75945 | Soybean | cytosol | 59.22 | 53.28 |
| CDX80354 | Canola | cytosol | 20.39 | 47.19 |
| CDY10250 | Canola | plastid | 50.49 | 42.28 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G194600.1 | EnsemblPlantsGene:TraesCS4D01G194600 | Gene3D:2.30.29.30 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0046907 |
| InterPro:IPR000156 | InterPro:IPR011993 | InterPro:PH-like_dom_sf | InterPro:Ran_bind_dom | ncoils:Coil | PANTHER:PTHR23138 |
| PANTHER:PTHR23138:SF105 | PFAM:PF00638 | PFscan:PS50196 | SEG:seg | SMART:SM00160 | SUPFAM:SSF50729 |
| TIGR:cd13179 | MapMan:23.5.1.6 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:337410894..337413375
Molecular Weight (calculated)
23021.0 Da
IEP (calculated)
4.502
GRAVY (calculated)
-0.722
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPAEHREE EEAAAAGEEE DTGAQIAPIV KLEEVAITTG EEDEDVLLDM KAKLYRFDKD GGQWKERGTG AVKLLKHKET AKVRLVMRQA KTLKICANHL
101: VVATTKMQEH AGSDKSCVWH ALDFADCELK EEMFAIRFGS VENCKKFKDL VDEIAEQQGK NEEKESEEVS SAAELVEKLT VAEVKKEEQT EKVETPAVDD
201: KKDAEK
101: VVATTKMQEH AGSDKSCVWH ALDFADCELK EEMFAIRFGS VENCKKFKDL VDEIAEQQGK NEEKESEEVS SAAELVEKLT VAEVKKEEQT EKVETPAVDD
201: KKDAEK
001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
Arabidopsis Description
RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.