Factsheet for PGSC0003DMT400021160

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g062660.2.1	Tomato	nucleus, plastid	96.43	96.43
PGSC0003DMT400052941	Potato	cytosol	63.39	66.98
VIT_04s0008g01410.t01	Wine grape	cytosol	65.18	66.36
Os03t0292800-01	Rice	plastid	61.16	65.55
PGSC0003DMT400078073	Potato	cytosol	64.29	65.16
GSMUA_Achr7P22420_001	Banana	cytosol	59.38	64.88
GSMUA_Achr11P...	Banana	cytosol	58.93	63.77
EER92413	Sorghum	cytosol	58.48	62.68
GSMUA_Achr11P...	Banana	cytosol	58.48	61.5
TraesCS4D01G194600.1	Wheat	cytosol	55.8	60.68
GSMUA_Achr10P...	Banana	cytosol	57.14	60.66
TraesCS4A01G110400.1	Wheat	cytosol	55.8	60.39
TraesCS4B01G193600.1	Wheat	cytosol	55.36	59.9
HORVU1Hr1G059970.2	Barley	cytosol	57.59	58.9
Zm00001d028755_P001	Maize	cytosol	58.93	58.67
Os05t0350600-01	Rice	cytosol, plasma membrane, plastid	57.59	58.64
TraesCS1A01G223800.1	Wheat	cytosol	58.04	58.56
TraesCS1D01G225400.1	Wheat	cytosol	58.04	58.56
TraesCS1B01G237100.1	Wheat	cytosol	57.59	58.11
Zm00001d047727_P002	Maize	cytosol	58.48	57.96
Zm00001d010504_P001	Maize	extracellular	56.7	57.47
EES19356	Sorghum	cytosol	56.25	57.01
GSMUA_Achr9P04480_001	Banana	cytosol	54.46	55.2
HORVU4Hr1G056140.3	Barley	plastid	56.7	46.01
Zm00001d037993_P001	Maize	cytosol	55.8	45.29

Protein Annotations

EntrezGene:102600266	Gene3D:2.30.29.30	MapMan:23.5.1.6	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	GO:GO:0046907	InterPro:IPR000156	InterPro:IPR011993
UniProt:M1AEP8	PFAM:PF00638	EnsemblPlantsGene:PGSC0003DMG400008193	PGSC:PGSC0003DMG400008193	EnsemblPlants:PGSC0003DMT400021160	InterPro:PH-like_dom_sf
PFscan:PS50196	PANTHER:PTHR23138	PANTHER:PTHR23138:SF107	InterPro:Ran_bind_dom	SMART:SM00160	SUPFAM:SSF50729
UniParc:UPI000296AC2E	RefSeq:XP_006351600.1	SEG:seg	:	:	:

Description

Ran binding protein-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400008193]

Coordinates

chr8:+:34810778..34813728

Molecular Weight (calculated)

24914.9 Da

IEP (calculated)

4.534

GRAVY (calculated)

-0.915

Length

224 amino acids

Sequence
(BLAST)

001: MASSTVEPKL EKKEEEVEPE VGENPTGDDE DTGAPVAPIV RLQEVAVSTG EENEHVLLDL KSKLYRFDKE GSQWKERGVG TVKLLKHKET GKVRLVMRQS
101: KTLKICANHL VLPTMSIQEH AGNEKSCVWH AADFADGELK DETFCIRFAS VENCKAFKEK VEEIAESQQT KSGESEEAGA AATELIEKLS VESKDKNDKP
201: EDKESPAATE EKEDKKEENA DEKN

Best Arabidopsis Sequence Match ( AT5G58590.1 )
(BLAST)

001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST

Arabidopsis Description

RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.