Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07140.1 | GSMUA_AchrUn_... | AT5G55190.1 | 21798944 |
| AT1G07140.1 | GSMUA_AchrUn_... | AT5G55190.1 | 9025305 |
| AT2G30060.1 | GSMUA_AchrUn_... | AT5G55190.1 | 9025305 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 67.42 | 71.98 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 65.61 | 70.73 |
| GSMUA_Achr11P... | Banana | cytosol | 67.87 | 70.42 |
| GSMUA_Achr10P... | Banana | cytosol | 66.52 | 69.67 |
| EES19356 | Sorghum | cytosol | 67.87 | 67.87 |
| Zm00001d010504_P001 | Maize | extracellular | 67.42 | 67.42 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 66.97 | 67.27 |
| TraesCS1D01G225400.1 | Wheat | cytosol | 66.97 | 66.67 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 66.97 | 66.67 |
| TraesCS1A01G223800.1 | Wheat | cytosol | 66.97 | 66.67 |
| HORVU1Hr1G059970.2 | Barley | cytosol | 66.06 | 66.67 |
| CDX86501 | Canola | cytosol | 11.76 | 60.47 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 60.18 | 60.45 |
| AT5G58590.1 | Thale cress | cytosol | 57.92 | 58.45 |
| KRH35051 | Soybean | endoplasmic reticulum | 56.56 | 57.34 |
| AT2G30060.1 | Thale cress | cytosol | 56.11 | 57.14 |
| Bra015554.1-P | Field mustard | cytosol | 56.56 | 56.82 |
| CDY06679 | Canola | cytosol | 56.56 | 56.82 |
| KRH75945 | Soybean | cytosol | 58.82 | 56.77 |
| CDY24034 | Canola | cytosol | 55.2 | 56.74 |
| KRG91719 | Soybean | endoplasmic reticulum | 57.01 | 56.5 |
| KRH65697 | Soybean | cytosol | 50.68 | 56.28 |
| CDY59068 | Canola | cytosol | 57.01 | 56.0 |
| CDY09935 | Canola | cytosol | 56.56 | 55.56 |
| CDX86496 | Canola | cytosol | 56.11 | 55.36 |
| CDY15604 | Canola | cytosol | 56.11 | 55.36 |
| CDX84862 | Canola | cytosol | 55.2 | 55.2 |
| Bra030675.1-P | Field mustard | cytosol | 55.66 | 54.91 |
| Bra022775.1-P | Field mustard | cytosol | 54.75 | 54.75 |
| PGSC0003DMT400021160 | Potato | cytosol | 55.2 | 54.46 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 55.2 | 54.46 |
| Bra031555.1-P | Field mustard | cytosol | 56.11 | 54.39 |
| AT1G07140.1 | Thale cress | cytosol | 55.66 | 53.95 |
| Zm00001d037993_P001 | Maize | cytosol | 66.97 | 53.62 |
| CDX80354 | Canola | cytosol | 20.36 | 50.56 |
| CDY10250 | Canola | plastid | 50.68 | 45.53 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0046907 | EnsemblPlantsGene:GSMUA_Achr9G04480_001 | EnsemblPlants:GSMUA_Achr9P04480_001 | EnsemblPlants:GSMUA_Achr9T04480_001 |
| InterPro:IPR000156 | InterPro:IPR011993 | UniProt:M0TXF7 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 |
| PANTHER:PTHR23138 | PANTHER:PTHR23138:SF105 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI000295043C |
| SEG:seg | : | : | : | : | : |
Description
Ran-binding protein 1 homolog c [Source:GMGC_GENE;Acc:GSMUA_Achr9G04480_001]
Coordinates
chr9:+:2979750..2982456
Molecular Weight (calculated)
24759.7 Da
IEP (calculated)
4.567
GRAVY (calculated)
-0.853
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTDVDRPE EEEAAADAGE EEDTGAHISP IVRLEEVAVT TGEEDEDSLL DLKAKLYRFD KEGNQWKERG SGNVKLLKHK ETGKVRLVMR QAKTLKICAN
101: HLVVPSIRMQ EHAGNDKSCV WHAMDFSDGE LKEEMFAIRF GSVENCKKFR EMVEEIAESV DKIEEEESKD VSSAASLIEK LTVSEDKTEG NTTKEAAHAD
201: DKKKEVHEEK QANTKESYSA S
101: HLVVPSIRMQ EHAGNDKSCV WHAMDFSDGE LKEEMFAIRF GSVENCKKFR EMVEEIAESV DKIEEEESKD VSSAASLIEK LTVSEDKTEG NTTKEAAHAD
201: DKKKEVHEEK QANTKESYSA S
001: MASISNEPER ENRDEEETGA NEDEDTGAQV APIVRLEEVA VTTGEEDEDT ILDLKSKLYR FDKDGSQWKE RGAGTVKFLK HRVSGKIRLV MRQSKTLKIC
101: ANHLVGSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVAE SEEEKEESKD ASDTAGLLEK LTVEEKESEK KPVEKAEENK
201: KSEAVEEKKT EESVPSA
101: ANHLVGSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVAE SEEEKEESKD ASDTAGLLEK LTVEEKESEK KPVEKAEENK
201: KSEAVEEKKT EESVPSA
Arabidopsis Description
RANBP1BRan-binding protein 1 homolog b [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.