Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07140.1 | GSMUA_AchrUn_... | AT5G55190.1 | 21798944 |
| AT1G07140.1 | GSMUA_AchrUn_... | AT5G55190.1 | 9025305 |
| AT2G30060.1 | GSMUA_AchrUn_... | AT5G55190.1 | 9025305 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 79.62 | 81.16 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 74.88 | 77.07 |
| GSMUA_Achr11P... | Banana | cytosol | 75.83 | 75.12 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 69.67 | 66.52 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 64.45 | 65.7 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 64.45 | 65.7 |
| Os03t0292800-01 | Rice | plastid | 64.93 | 65.55 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 63.98 | 65.53 |
| CDX86501 | Canola | cytosol | 13.27 | 65.12 |
| EER92413 | Sorghum | cytosol | 63.51 | 64.11 |
| VIT_04s0008g01410.t01 | Wine grape | cytosol | 63.51 | 60.91 |
| CDY24034 | Canola | cytosol | 60.66 | 59.53 |
| KRH65697 | Soybean | cytosol | 55.45 | 58.79 |
| KRG91719 | Soybean | endoplasmic reticulum | 62.09 | 58.74 |
| AT2G30060.1 | Thale cress | cytosol | 60.19 | 58.53 |
| Zm00001d047727_P002 | Maize | cytosol | 62.09 | 57.96 |
| Solyc08g062660.2.1 | Tomato | nucleus, plastid | 61.14 | 57.59 |
| Bra022775.1-P | Field mustard | cytosol | 60.19 | 57.47 |
| Zm00001d028755_P001 | Maize | cytosol | 61.14 | 57.33 |
| PGSC0003DMT400021160 | Potato | cytosol | 60.66 | 57.14 |
| KRH35051 | Soybean | endoplasmic reticulum | 58.77 | 56.88 |
| CDX84862 | Canola | cytosol | 59.24 | 56.56 |
| CDY06679 | Canola | cytosol | 58.77 | 56.36 |
| Bra015554.1-P | Field mustard | cytosol | 58.77 | 56.36 |
| KRH75945 | Soybean | cytosol | 61.14 | 56.33 |
| CDY15604 | Canola | cytosol | 59.24 | 55.8 |
| AT5G58590.1 | Thale cress | cytosol | 57.82 | 55.71 |
| CDY59068 | Canola | cytosol | 59.24 | 55.56 |
| Bra030675.1-P | Field mustard | cytosol | 58.77 | 55.36 |
| CDX86496 | Canola | cytosol | 58.77 | 55.36 |
| CDY09935 | Canola | cytosol | 58.77 | 55.11 |
| AT1G07140.1 | Thale cress | cytosol | 59.24 | 54.82 |
| Bra031555.1-P | Field mustard | cytosol | 58.29 | 53.95 |
| HORVU4Hr1G056140.3 | Barley | plastid | 64.93 | 49.64 |
| CDX80354 | Canola | cytosol | 18.96 | 44.94 |
| CDY10250 | Canola | plastid | 51.18 | 43.9 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0046907 | EnsemblPlantsGene:GSMUA_Achr10G05950_001 | EnsemblPlants:GSMUA_Achr10P05950_001 | EnsemblPlants:GSMUA_Achr10T05950_001 | InterPro:IPR000156 |
| InterPro:IPR011993 | UniProt:M0RFS2 | PFAM:PF00638 | InterPro:PH-like_dom_sf | PFscan:PS50196 | PANTHER:PTHR23138 |
| PANTHER:PTHR23138:SF107 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 | UniParc:UPI0002956FFA | SEG:seg |
Description
Ran-binding protein 1 homolog c [Source:GMGC_GENE;Acc:GSMUA_Achr10G05950_001]
Coordinates
chr10:+:16439332..16442434
Molecular Weight (calculated)
22976.7 Da
IEP (calculated)
4.355
GRAVY (calculated)
-0.573
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNDPDRQE EAAAGDDEDT GAQIAPIVTL SEVAVTTGEE EEDVLLDLKA KLYRFDKDGN QWKERGSGSV KLLKHTETGK VRLVMRQAKT LKICANHLVV
101: PSIKIQEHAG NDKSCVWHAS DFADGELKEE MFCIRFGSVE NCKKFMEMIE SITESLGERE EEESEDAAAA AAGLLDKLSV DGSQKAKAAA AEEEVAAKVE
201: AKAEQSTKSE D
101: PSIKIQEHAG NDKSCVWHAS DFADGELKEE MFCIRFGSVE NCKKFMEMIE SITESLGERE EEESEDAAAA AAGLLDKLSV DGSQKAKAAA AEEEVAAKVE
201: AKAEQSTKSE D
001: MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
101: LISSGMSVQE HSGNEKSCLW HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV EENISEEKAK EAEEKEPAKE
201: DKETKKEKVE EEKKTEAST
Arabidopsis Description
RANBP1CAt5g58590 [Source:UniProtKB/TrEMBL;Acc:Q1WWI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.