CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86496	Canola	cytosol	88.37	16.96
CDY15604	Canola	cytosol	88.37	16.96
CDY09935	Canola	cytosol	88.37	16.89
CDY59068	Canola	cytosol	88.37	16.89
CDY06679	Canola	cytosol	86.05	16.82
KRH35051	Soybean	endoplasmic reticulum	83.72	16.51
KRG91719	Soybean	endoplasmic reticulum	83.72	16.14
CDY24034	Canola	cytosol	79.07	15.81
CDX84862	Canola	cytosol	79.07	15.38
VIT_06s0004g06880.t01	Wine grape	cytosol	79.07	15.25
CDY10250	Canola	plastid	83.72	14.63
GSMUA_Achr7P22420_001	Banana	cytosol	65.12	13.66
GSMUA_Achr11P...	Banana	cytosol	65.12	13.53
GSMUA_Achr10P...	Banana	cytosol	65.12	13.27
GSMUA_Achr11P...	Banana	cytosol	65.12	13.15
Os03t0292800-01	Rice	plastid	60.47	12.44
TraesCS4D01G194600.1	Wheat	cytosol	58.14	12.14
TraesCS4B01G193600.1	Wheat	cytosol	58.14	12.08
TraesCS4A01G110400.1	Wheat	cytosol	58.14	12.08
EER92413	Sorghum	cytosol	58.14	11.96
HORVU1Hr1G059970.2	Barley	cytosol	60.47	11.87
Os05t0350600-01	Rice	cytosol, plasma membrane, plastid	60.47	11.82
GSMUA_Achr9P04480_001	Banana	cytosol	60.47	11.76
EES19356	Sorghum	cytosol	60.47	11.76
Zm00001d010504_P001	Maize	extracellular	60.47	11.76
TraesCS1A01G223800.1	Wheat	cytosol	60.47	11.71
TraesCS1B01G237100.1	Wheat	cytosol	60.47	11.71
TraesCS1D01G225400.1	Wheat	cytosol	60.47	11.71
Zm00001d028755_P001	Maize	cytosol	60.47	11.56
Zm00001d047727_P002	Maize	cytosol	60.47	11.5
CDX80354	Canola	cytosol	23.26	11.24
Zm00001d037993_P001	Maize	cytosol	62.79	9.78
HORVU4Hr1G056140.3	Barley	plastid	58.14	9.06

Protein Annotations

EnsemblPlants:CDX86501	EnsemblPlantsGene:GSBRNA2T00145101001	Gene3D:2.30.29.30	GO:A0A078DB51	GO:GO:0006810	GO:GO:0008150
GO:GO:0046907	InterPro:IPR000156	InterPro:IPR011993	InterPro:PH-like_dom_sf	InterPro:Ran_bind_dom	PANTHER:PTHR23138
PANTHER:PTHR23138:SF107	PFAM:PF00638	ProteinID:CDX86501	ProteinID:CDX86501.1	SUPFAM:SSF50729	UniParc:UPI0004EDC329
MapMan:35.1	:	:	:	:	:

Description

BnaC08g02020D

Coordinates

chrLK031846:+:178405..178536

Molecular Weight (calculated)

5018.8 Da

IEP (calculated)

4.367

GRAVY (calculated)

-0.412

Length

43 amino acids

Sequence
(BLAST)

1: MSVQEHVGNE KSCVWHARDF ADGELKDELF CIRFASIESE YQL

Best Arabidopsis Sequence Match ( AT1G07140.1 )
(BLAST)

001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST

Arabidopsis Description

RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.