Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30060.1 | CDX70904 | AT5G20010.1 | 9025305 |
| AT2G30060.1 | CDY06600 | AT5G55190.1 | 9025305 |
| AT2G30060.1 | CDY17309 | AT5G55190.1 | 9025305 |
| AT2G30060.1 | CDY19907 | AT5G55190.1 | 9025305 |
| AT2G30060.1 | CDY20779 | AT5G55190.1 | 9025305 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022775.1-P | Field mustard | cytosol | 95.35 | 92.76 |
| CDX84862 | Canola | cytosol | 95.35 | 92.76 |
| AT2G30060.1 | Thale cress | cytosol | 87.91 | 87.1 |
| CDX86501 | Canola | cytosol | 15.81 | 79.07 |
| CDY15604 | Canola | cytosol | 79.53 | 76.34 |
| CDX86496 | Canola | cytosol | 78.14 | 75.0 |
| CDY59068 | Canola | cytosol | 77.21 | 73.78 |
| CDY09935 | Canola | cytosol | 76.74 | 73.33 |
| CDY06679 | Canola | cytosol | 73.49 | 71.82 |
| Solyc06g082120.2.1 | Tomato | extracellular | 67.44 | 68.72 |
| GSMUA_Achr7P22420_001 | Banana | cytosol | 62.79 | 65.85 |
| PGSC0003DMT400078073 | Potato | cytosol | 66.98 | 65.16 |
| PGSC0003DMT400052941 | Potato | cytosol | 62.79 | 63.68 |
| GSMUA_Achr11P... | Banana | cytosol | 59.53 | 61.84 |
| GSMUA_Achr10P... | Banana | cytosol | 59.53 | 60.66 |
| Os03t0292800-01 | Rice | plastid | 58.14 | 59.81 |
| TraesCS4D01G194600.1 | Wheat | cytosol | 57.21 | 59.71 |
| Os05t0350600-01 | Rice | cytosol, plasma membrane, plastid | 60.93 | 59.55 |
| TraesCS4A01G110400.1 | Wheat | cytosol | 57.21 | 59.42 |
| GSMUA_Achr11P... | Banana | cytosol | 58.6 | 59.15 |
| TraesCS1A01G223800.1 | Wheat | cytosol | 60.93 | 59.01 |
| TraesCS1B01G237100.1 | Wheat | cytosol | 60.93 | 59.01 |
| TraesCS1D01G225400.1 | Wheat | cytosol | 60.93 | 59.01 |
| TraesCS4B01G193600.1 | Wheat | cytosol | 56.74 | 58.94 |
| HORVU1Hr1G059970.2 | Barley | cytosol | 60.0 | 58.9 |
| EER92413 | Sorghum | cytosol | 56.28 | 57.89 |
| CDY10250 | Canola | plastid | 65.58 | 57.32 |
| EES19356 | Sorghum | cytosol | 58.6 | 57.01 |
| Zm00001d010504_P001 | Maize | extracellular | 57.21 | 55.66 |
| GSMUA_Achr9P04480_001 | Banana | cytosol | 56.74 | 55.2 |
| Zm00001d028755_P001 | Maize | cytosol | 55.35 | 52.89 |
| Zm00001d047727_P002 | Maize | cytosol | 54.42 | 51.77 |
| CDX80354 | Canola | cytosol | 20.0 | 48.31 |
| HORVU4Hr1G056140.3 | Barley | plastid | 57.67 | 44.93 |
| Zm00001d037993_P001 | Maize | cytosol | 57.67 | 44.93 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:23.5.1.6 | GO:A0A078GFD9 | UniProt:A0A078GFD9 | EnsemblPlants:CDY24034 | ProteinID:CDY24034 |
| ProteinID:CDY24034.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0046907 | EnsemblPlantsGene:GSBRNA2T00024561001 | InterPro:IPR000156 | InterPro:IPR011993 | PFAM:PF00638 | InterPro:PH-like_dom_sf |
| PFscan:PS50196 | PANTHER:PTHR23138 | PANTHER:PTHR23138:SF107 | InterPro:Ran_bind_dom | SMART:SM00160 | SUPFAM:SSF50729 |
| UniParc:UPI0004EABD18 | SEG:seg | : | : | : | : |
Description
BnaC03g16570DBnaC03g16570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFD9]
Coordinates
chrLK032152:-:575472..577543
Molecular Weight (calculated)
23990.8 Da
IEP (calculated)
4.479
GRAVY (calculated)
-0.841
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MASISNEPER EEESGANEDE DTGAQVAPII KLEEVAVTTG EENEDAILDL KSKLYRFDKD GSQWKERGAG TVKFLKHKES GKIRLVMRQS KTLKICANHL
101: VTSGMSVQEH AGNDKSCVWH ARDFSDGELK DELFCIRFAS VENCKAFMQK FKEVADSEEE SKEASDTAGL LEKLTVEEKD TEEKKEEKPV EKVASAEEAE
201: KAVEEKKTEE SVPSA
101: VTSGMSVQEH AGNDKSCVWH ARDFSDGELK DELFCIRFAS VENCKAFMQK FKEVADSEEE SKEASDTAGL LEKLTVEEKD TEEKKEEKPV EKVASAEEAE
201: KAVEEKKTEE SVPSA
001: MASISNEPER ENRDEEETGA NEDEDTGAQV APIVRLEEVA VTTGEEDEDT ILDLKSKLYR FDKDGSQWKE RGAGTVKFLK HRVSGKIRLV MRQSKTLKIC
101: ANHLVGSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVAE SEEEKEESKD ASDTAGLLEK LTVEEKESEK KPVEKAEENK
201: KSEAVEEKKT EESVPSA
101: ANHLVGSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVAE SEEEKEESKD ASDTAGLLEK LTVEEKESEK KPVEKAEENK
201: KSEAVEEKKT EESVPSA
Arabidopsis Description
RANBP1BRan-binding protein 1 homolog b [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.