Factsheet for PGSC0003DMT400078073

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400016576
PGSC0003DMT400076528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07140.1	PGSC0003DMT400016576	AT5G55190.1	21798944
AT1G07140.1	PGSC0003DMT400076528	AT5G55190.1	21798944
AT1G07140.1	PGSC0003DMT400016576	AT5G55190.1	9025305
AT1G07140.1	PGSC0003DMT400076528	AT5G55190.1	9025305
AT2G30060.1	PGSC0003DMT400016576	AT5G55190.1	9025305
AT2G30060.1	PGSC0003DMT400076528	AT5G55190.1	9025305

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082120.2.1	Tomato	extracellular	90.05	94.31
PGSC0003DMT400052941	Potato	cytosol	73.76	76.89
VIT_06s0004g06880.t01	Wine grape	cytosol	75.11	74.44
KRG91719	Soybean	endoplasmic reticulum	73.3	72.65
KRH35051	Soybean	endoplasmic reticulum	71.49	72.48
CDY59068	Canola	cytosol	69.68	68.44
CDY15604	Canola	cytosol	69.23	68.3
CDY09935	Canola	cytosol	69.23	68.0
Bra031555.1-P	Field mustard	cytosol	70.14	67.98
CDX86496	Canola	cytosol	68.78	67.86
CDY06679	Canola	cytosol	67.42	67.73
Bra015554.1-P	Field mustard	cytosol	67.42	67.73
Bra030675.1-P	Field mustard	cytosol	68.33	67.41
CDY24034	Canola	cytosol	65.16	66.98
AT1G07140.1	Thale cress	cytosol	68.78	66.67
AT2G30060.1	Thale cress	cytosol	65.16	66.36
AT5G58590.1	Thale cress	cytosol	65.61	66.21
CDX84862	Canola	cytosol	65.16	65.16
Bra022775.1-P	Field mustard	cytosol	65.16	65.16
PGSC0003DMT400021160	Potato	cytosol	65.16	64.29
CDY10250	Canola	plastid	60.63	54.47

Protein Annotations

EntrezGene:102592691	Gene3D:2.30.29.30	MapMan:23.5.1.6	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0008150	GO:GO:0046907	InterPro:IPR000156	InterPro:IPR011993	UniProt:M1CZC4
PFAM:PF00638	EnsemblPlantsGene:PGSC0003DMG400030368	PGSC:PGSC0003DMG400030368	EnsemblPlants:PGSC0003DMT400078073	InterPro:PH-like_dom_sf	PFscan:PS50196
PANTHER:PTHR23138	PANTHER:PTHR23138:SF107	InterPro:Ran_bind_dom	SMART:SM00160	SUPFAM:SSF50729	UniParc:UPI0002953A1F
RefSeq:XP_006350848.1	SEG:seg	:	:	:	:

Description

Ran binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030368]

Coordinates

chr6:+:57326191..57329883

Molecular Weight (calculated)

24806.8 Da

IEP (calculated)

4.586

GRAVY (calculated)

-0.920

Length

221 amino acids

Sequence
(BLAST)

001: MSSAEPKHEH REEEEAAGAD DEDTGAHVAP IVRLEEVAVT TGEENEDAIL DLKAKLYRFD KEGNQWKERG AGTVKLLKHK ETGKVRLVMR QSKTLKICAN
101: HLVIPTMTVQ EHAGNEKSCV WHAADFADGE LKDEFFCIRF ASLENCKTFM ETFQEVAESQ TKKEENVDAS NAAGLLEKLS VEDKKPEEKS EEKTEEKVKE
201: DDVKEEKPSD NAEKKEEAAS A

Best Arabidopsis Sequence Match ( AT1G07140.1 )
(BLAST)

001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST

Arabidopsis Description

RANBP1ARan-binding protein 1 homolog a [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.